BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

39 related articles for article (PubMed ID: 23875683)

  • 1. The ENCODE Uniform Analysis Pipelines.
    Hitz BC; Lee JW; Jolanki O; Kagda MS; Graham K; Sud P; Gabdank I; Strattan JS; Sloan CA; Dreszer T; Rowe LD; Podduturi NR; Malladi VS; Chan ET; Davidson JM; Ho M; Miyasato S; Simison M; Tanaka F; Luo Y; Whaling I; Hong EL; Lee BT; Sandstrom R; Rynes E; Nelson J; Nishida A; Ingersoll A; Buckley M; Frerker M; Kim DS; Boley N; Trout D; Dobin A; Rahmanian S; Wyman D; Balderrama-Gutierrez G; Reese F; Durand NC; Dudchenko O; Weisz D; Rao SSP; Blackburn A; Gkountaroulis D; Sadr M; Olshansky M; Eliaz Y; Nguyen D; Bochkov I; Shamim MS; Mahajan R; Aiden E; Gingeras T; Heath S; Hirst M; Kent WJ; Kundaje A; Mortazavi A; Wold B; Cherry JM
    Res Sq; 2023 Jul; ():. PubMed ID: 37503119
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The ENCODE Uniform Analysis Pipelines.
    Hitz BC; Jin-Wook L; Jolanki O; Kagda MS; Graham K; Sud P; Gabdank I; Strattan JS; Sloan CA; Dreszer T; Rowe LD; Podduturi NR; Malladi VS; Chan ET; Davidson JM; Ho M; Miyasato S; Simison M; Tanaka F; Luo Y; Whaling I; Hong EL; Lee BT; Sandstrom R; Rynes E; Nelson J; Nishida A; Ingersoll A; Buckley M; Frerker M; Kim DS; Boley N; Trout D; Dobin A; Rahmanian S; Wyman D; Balderrama-Gutierrez G; Reese F; Durand NC; Dudchenko O; Weisz D; Rao SSP; Blackburn A; Gkountaroulis D; Sadr M; Olshansky M; Eliaz Y; Nguyen D; Bochkov I; Shamim MS; Mahajan R; Aiden E; Gingeras T; Heath S; Hirst M; Kent WJ; Kundaje A; Mortazavi A; Wold B; Cherry JM
    bioRxiv; 2023 Apr; ():. PubMed ID: 37066421
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Federated Galaxy: Biomedical Computing at the Frontier.
    Afgan E; Jalili V; Goonasekera N; Taylor J; Goecks J
    IEEE Int Conf Cloud Comput; 2018 Jul; 2018():. PubMed ID: 34386295
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Cloud computing for genomic data analysis and collaboration.
    Langmead B; Nellore A
    Nat Rev Genet; 2018 Apr; 19(4):208-219. PubMed ID: 29379135
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Insulin/IGF1 signaling inhibits age-dependent axon regeneration.
    Byrne AB; Walradt T; Gardner KE; Hubbert A; Reinke V; Hammarlund M
    Neuron; 2014 Feb; 81(3):561-73. PubMed ID: 24440228
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genomics in the clouds.
    Marx V
    Nat Methods; 2013 Oct; 10(10):941-5. PubMed ID: 24076987
    [No Abstract]   [Full Text] [Related]  

  • 7. Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
    Mundade R; Ozer HG; Wei H; Prabhu L; Lu T
    Cell Cycle; 2014; 13(18):2847-52. PubMed ID: 25486472
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Lessons from modENCODE.
    Brown JB; Celniker SE
    Annu Rev Genomics Hum Genet; 2015; 16():31-53. PubMed ID: 26133010
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE.
    Trinh QM; Jen FY; Zhou Z; Chu KM; Perry MD; Kephart ET; Contrino S; Ruzanov P; Stein LD
    BMC Genomics; 2013 Jul; 14():494. PubMed ID: 23875683
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details.
    Washington NL; Stinson EO; Perry MD; Ruzanov P; Contrino S; Smith R; Zha Z; Lyne R; Carr A; Lloyd P; Kephart E; McKay SJ; Micklem G; Stein LD; Lewis SE
    Database (Oxford); 2011; 2011():bar023. PubMed ID: 21856757
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
    Landt SG; Marinov GK; Kundaje A; Kheradpour P; Pauli F; Batzoglou S; Bernstein BE; Bickel P; Brown JB; Cayting P; Chen Y; DeSalvo G; Epstein C; Fisher-Aylor KI; Euskirchen G; Gerstein M; Gertz J; Hartemink AJ; Hoffman MM; Iyer VR; Jung YL; Karmakar S; Kellis M; Kharchenko PV; Li Q; Liu T; Liu XS; Ma L; Milosavljevic A; Myers RM; Park PJ; Pazin MJ; Perry MD; Raha D; Reddy TE; Rozowsky J; Shoresh N; Sidow A; Slattery M; Stamatoyannopoulos JA; Tolstorukov MY; White KP; Xi S; Farnham PJ; Lieb JD; Wold BJ; Snyder M
    Genome Res; 2012 Sep; 22(9):1813-31. PubMed ID: 22955991
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PeakRanger: a cloud-enabled peak caller for ChIP-seq data.
    Feng X; Grossman R; Stein L
    BMC Bioinformatics; 2011 May; 12():139. PubMed ID: 21554709
    [TBL] [Abstract][Full Text] [Related]  

  • 13. New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.
    Luo Y; Hitz BC; Gabdank I; Hilton JA; Kagda MS; Lam B; Myers Z; Sud P; Jou J; Lin K; Baymuradov UK; Graham K; Litton C; Miyasato SR; Strattan JS; Jolanki O; Lee JW; Tanaka FY; Adenekan P; O'Neill E; Cherry JM
    Nucleic Acids Res; 2020 Jan; 48(D1):D882-D889. PubMed ID: 31713622
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets.
    Heath AP; Greenway M; Powell R; Spring J; Suarez R; Hanley D; Bandlamudi C; McNerney ME; White KP; Grossman RL
    J Am Med Inform Assoc; 2014; 21(6):969-75. PubMed ID: 24464852
    [TBL] [Abstract][Full Text] [Related]  

  • 15.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

  • 16.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

  • 17.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

  • 18.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

  • 19.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 2.