These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
649 related articles for article (PubMed ID: 23895370)
1. Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data. Hermida L; Poussin C; Stadler MB; Gubian S; Sewer A; Gaidatzis D; Hotz HR; Martin F; Belcastro V; Cano S; Peitsch MC; Hoeng J BMC Genomics; 2013 Jul; 14():514. PubMed ID: 23895370 [TBL] [Abstract][Full Text] [Related]
2. Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management. Maruschke M; Reuter D; Koczan D; Hakenberg OW; Thiesen HJ BJU Int; 2011 Jul; 108(2 Pt 2):E29-35. PubMed ID: 21435154 [TBL] [Abstract][Full Text] [Related]
3. GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. Eden E; Navon R; Steinfeld I; Lipson D; Yakhini Z BMC Bioinformatics; 2009 Feb; 10():48. PubMed ID: 19192299 [TBL] [Abstract][Full Text] [Related]
4. Transcriptomics and epigenetic data integration learning module on Google Cloud. Ruprecht NA; Kennedy JD; Bansal B; Singhal S; Sens D; Maggio A; Doe V; Hawkins D; Campbel R; O'Connell K; Gill JS; Schaefer K; Singhal SK Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39101486 [TBL] [Abstract][Full Text] [Related]
5. flowCore: a Bioconductor package for high throughput flow cytometry. Hahne F; LeMeur N; Brinkman RR; Ellis B; Haaland P; Sarkar D; Spidlen J; Strain E; Gentleman R BMC Bioinformatics; 2009 Apr; 10():106. PubMed ID: 19358741 [TBL] [Abstract][Full Text] [Related]
6. GeneNotes--a novel information management software for biologists. Hong P; Wong WH BMC Bioinformatics; 2005 Feb; 6():20. PubMed ID: 15686593 [TBL] [Abstract][Full Text] [Related]
7. Integration, warehousing, and analysis strategies of Omics data. Gedela S Methods Mol Biol; 2011; 719():399-414. PubMed ID: 21370094 [TBL] [Abstract][Full Text] [Related]
8. GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments. Kirov SA; Peng X; Baker E; Schmoyer D; Zhang B; Snoddy J BMC Bioinformatics; 2005 Mar; 6():72. PubMed ID: 15790402 [TBL] [Abstract][Full Text] [Related]
9. qPortal: A platform for data-driven biomedical research. Mohr C; Friedrich A; Wojnar D; Kenar E; Polatkan AC; Codrea MC; Czemmel S; Kohlbacher O; Nahnsen S PLoS One; 2018; 13(1):e0191603. PubMed ID: 29352322 [TBL] [Abstract][Full Text] [Related]
10. GARNET--gene set analysis with exploration of annotation relations. Rho K; Kim B; Jang Y; Lee S; Bae T; Seo J; Seo C; Lee J; Kang H; Yu U; Kim S; Lee S; Kim WK BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S25. PubMed ID: 21342555 [TBL] [Abstract][Full Text] [Related]
14. systemPipeR: NGS workflow and report generation environment. H Backman TW; Girke T BMC Bioinformatics; 2016 Sep; 17():388. PubMed ID: 27650223 [TBL] [Abstract][Full Text] [Related]
15. GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions. Gundersen GW; Jones MR; Rouillard AD; Kou Y; Monteiro CD; Feldmann AS; Hu KS; Ma'ayan A Bioinformatics; 2015 Sep; 31(18):3060-2. PubMed ID: 25971742 [TBL] [Abstract][Full Text] [Related]
16. mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling data. Kaspi A; Ziemann M BMC Genomics; 2020 Jun; 21(1):447. PubMed ID: 32600408 [TBL] [Abstract][Full Text] [Related]
17. Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes. Balestrieri C; Alberghina L; Vanoni M; Chiaradonna F BMC Bioinformatics; 2009 Oct; 10 Suppl 12(Suppl 12):S1. PubMed ID: 19828069 [TBL] [Abstract][Full Text] [Related]
18. Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'. Kuhn A; Luthi-Carter R; Delorenzi M BMC Bioinformatics; 2008 Jan; 9():26. PubMed ID: 18201381 [TBL] [Abstract][Full Text] [Related]
19. The Gaggle: an open-source software system for integrating bioinformatics software and data sources. Shannon PT; Reiss DJ; Bonneau R; Baliga NS BMC Bioinformatics; 2006 Mar; 7():176. PubMed ID: 16569235 [TBL] [Abstract][Full Text] [Related]