223 related articles for article (PubMed ID: 23902749)
1. Evidence for deep phylogenetic conservation of exonic splice-related constraints: splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans.
Wu X; Tronholm A; Cáceres EF; Tovar-Corona JM; Chen L; Urrutia AO; Hurst LD
Genome Biol Evol; 2013; 5(9):1731-45. PubMed ID: 23902749
[TBL] [Abstract][Full Text] [Related]
2. Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster.
Warnecke T; Hurst LD
Mol Biol Evol; 2007 Dec; 24(12):2755-62. PubMed ID: 17905999
[TBL] [Abstract][Full Text] [Related]
3. Why Selection Might Be Stronger When Populations Are Small: Intron Size and Density Predict within and between-Species Usage of Exonic Splice Associated cis-Motifs.
Wu X; Hurst LD
Mol Biol Evol; 2015 Jul; 32(7):1847-61. PubMed ID: 25771198
[TBL] [Abstract][Full Text] [Related]
4. Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns.
Dewey CN; Rogozin IB; Koonin EV
BMC Genomics; 2006 Dec; 7():311. PubMed ID: 17156453
[TBL] [Abstract][Full Text] [Related]
5. Purifying Selection on Exonic Splice Enhancers in Intronless Genes.
Savisaar R; Hurst LD
Mol Biol Evol; 2016 Jun; 33(6):1396-418. PubMed ID: 26802218
[TBL] [Abstract][Full Text] [Related]
6. Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes.
Warnecke T; Parmley JL; Hurst LD
Genome Biol; 2008; 9(2):R29. PubMed ID: 18257921
[TBL] [Abstract][Full Text] [Related]
7. Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals.
Parmley JL; Hurst LD
Mol Biol Evol; 2007 Aug; 24(8):1600-3. PubMed ID: 17525472
[TBL] [Abstract][Full Text] [Related]
8. Effect of exonic splicing regulation on synonymous codon usage in alternatively spliced exons of Dscam.
Takahashi A
BMC Evol Biol; 2009 Aug; 9():214. PubMed ID: 19709440
[TBL] [Abstract][Full Text] [Related]
9. Determinants of the Usage of Splice-Associated cis-Motifs Predict the Distribution of Human Pathogenic SNPs.
Wu X; Hurst LD
Mol Biol Evol; 2016 Feb; 33(2):518-29. PubMed ID: 26545919
[TBL] [Abstract][Full Text] [Related]
10. The evolution, impact and properties of exonic splice enhancers.
Cáceres EF; Hurst LD
Genome Biol; 2013 Dec; 14(12):R143. PubMed ID: 24359918
[TBL] [Abstract][Full Text] [Related]
11. Biased codon usage near intron-exon junctions: selection on splicing enhancers, splice-site recognition or something else?
Chamary JV; Hurst LD
Trends Genet; 2005 May; 21(5):256-9. PubMed ID: 15851058
[TBL] [Abstract][Full Text] [Related]
12. Distribution of exonic splicing enhancer elements in human genes.
Wu Y; Zhang Y; Zhang J
Genomics; 2005 Sep; 86(3):329-36. PubMed ID: 16005179
[TBL] [Abstract][Full Text] [Related]
13. Exonic splicing enhancers contribute to the use of both 3' and 5' splice site usage of rat beta-tropomyosin pre-mRNA.
Selvakumar M; Helfman DM
RNA; 1999 Mar; 5(3):378-94. PubMed ID: 10094307
[TBL] [Abstract][Full Text] [Related]
14. Computational analysis of splicing errors and mutations in human transcripts.
Kurmangaliyev YZ; Gelfand MS
BMC Genomics; 2008 Jan; 9():13. PubMed ID: 18194514
[TBL] [Abstract][Full Text] [Related]
15. Splicing and the evolution of proteins in mammals.
Parmley JL; Urrutia AO; Potrzebowski L; Kaessmann H; Hurst LD
PLoS Biol; 2007 Feb; 5(2):e14. PubMed ID: 17298171
[TBL] [Abstract][Full Text] [Related]
16. Purifying selection on splice-related motifs, not expression level nor RNA folding, explains nearly all constraint on human lincRNAs.
Schüler A; Ghanbarian AT; Hurst LD
Mol Biol Evol; 2014 Dec; 31(12):3164-83. PubMed ID: 25158797
[TBL] [Abstract][Full Text] [Related]
17. Differentiated evolutionary rates in alternative exons and the implications for splicing regulation.
Plass M; Eyras E
BMC Evol Biol; 2006 Jun; 6():50. PubMed ID: 16792801
[TBL] [Abstract][Full Text] [Related]
18. A Depletion of Stop Codons in lincRNA is Owing to Transfer of Selective Constraint from Coding Sequences.
Abrahams L; Hurst LD
Mol Biol Evol; 2020 Apr; 37(4):1148-1164. PubMed ID: 31841162
[TBL] [Abstract][Full Text] [Related]
19. AU-rich intronic elements affect pre-mRNA 5' splice site selection in Drosophila melanogaster.
McCullough AJ; Schuler MA
Mol Cell Biol; 1993 Dec; 13(12):7689-97. PubMed ID: 8246985
[TBL] [Abstract][Full Text] [Related]
20. An exonic splicing enhancer offsets the atypical GU-rich 3' splice site of human apolipoprotein A-II exon 3.
Arrisi-Mercado P; Romano M; Muro AF; Baralle FE
J Biol Chem; 2004 Sep; 279(38):39331-9. PubMed ID: 15247216
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]