These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 23908262)

  • 1. SPNConverter: a new link between static and dynamic complex network analysis.
    Dent JE; Yang X; Nardini C
    Bioinformatics; 2013 Oct; 29(19):2507-8. PubMed ID: 23908262
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fluxviz - Cytoscape plug-in for visualization of flux distributions in networks.
    König M; Holzhütter HG
    Genome Inform; 2010; 24():96-103. PubMed ID: 22081592
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PetriScape - A plugin for discrete Petri net simulations in Cytoscape.
    Almeida D; Azevedo V; Silva A; Baumbach J
    J Integr Bioinform; 2016 Jun; 13(1):284. PubMed ID: 27402693
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SBML export interface for the systems biology toolbox for MATLAB.
    Schmidt H; Drews G; Vera J; Wolkenhauer O
    Bioinformatics; 2007 May; 23(10):1297-8. PubMed ID: 17384017
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GraphML-SBGN bidirectional converter for metabolic networks.
    Balaur I; Roy L; Touré V; Mazein A; Auffray C
    J Integr Bioinform; 2022 Dec; 19(4):. PubMed ID: 36563404
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Computing graphlet signatures of network nodes and motifs in Cytoscape with GraphletCounter.
    Whelan C; Sönmez K
    Bioinformatics; 2012 Jan; 28(2):290-1. PubMed ID: 22155862
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CytoGEDEVO-global alignment of biological networks with Cytoscape.
    Malek M; Ibragimov R; Albrecht M; Baumbach J
    Bioinformatics; 2016 Apr; 32(8):1259-61. PubMed ID: 26669930
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The signaling petri net-based simulator: a non-parametric strategy for characterizing the dynamics of cell-specific signaling networks.
    Ruths D; Muller M; Tseng JT; Nakhleh L; Ram PT
    PLoS Comput Biol; 2008 Feb; 4(2):e1000005. PubMed ID: 18463702
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways.
    Flórez LA; Lammers CR; Michna R; Stülke J
    Bioinformatics; 2010 Dec; 26(23):2997-9. PubMed ID: 20947526
    [TBL] [Abstract][Full Text] [Related]  

  • 10. GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models.
    Bois FY
    Bioinformatics; 2009 Jun; 25(11):1453-4. PubMed ID: 19304877
    [TBL] [Abstract][Full Text] [Related]  

  • 11. WinBEST-KIT: Biochemical reaction simulator that can define and customize algebraic equations and events as GUI components.
    Sekiguchi T; Hamada H; Okamoto M
    J Bioinform Comput Biol; 2019 Dec; 17(6):1950036. PubMed ID: 32019416
    [TBL] [Abstract][Full Text] [Related]  

  • 12. cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats.
    Balaur I; Roy L; Mazein A; Karaca SG; Dogrusoz U; Barillot E; Zinovyev A
    Bioinformatics; 2020 Apr; 36(8):2620-2622. PubMed ID: 31904823
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Biological Network Inference and analysis using SEBINI and CABIN.
    Taylor R; Singhal M
    Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization.
    Li M; Yang J; Wu FX; Pan Y; Wang J
    Bioinformatics; 2018 May; 34(9):1597-1599. PubMed ID: 29293938
    [TBL] [Abstract][Full Text] [Related]  

  • 15. XlinkCyNET: A Cytoscape Application for Visualization of Protein Interaction Networks Based on Cross-Linking Mass Spectrometry Identifications.
    Lima DB; Zhu Y; Liu F
    J Proteome Res; 2021 Apr; 20(4):1943-1950. PubMed ID: 33689356
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML.
    Vlaic S; Hoffmann B; Kupfer P; Weber M; Dräger A
    Bioinformatics; 2013 Sep; 29(17):2216-7. PubMed ID: 23803467
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SBMLToolbox: an SBML toolbox for MATLAB users.
    Keating SM; Bornstein BJ; Finney A; Hucka M
    Bioinformatics; 2006 May; 22(10):1275-7. PubMed ID: 16574696
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
    Zinovyev A; Viara E; Calzone L; Barillot E
    Bioinformatics; 2008 Mar; 24(6):876-7. PubMed ID: 18024474
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
    Bonnet E; Calzone L; Rovera D; Stoll G; Barillot E; Zinovyev A
    BMC Syst Biol; 2013 Mar; 7():18. PubMed ID: 23453054
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis.
    Wu L; Li M; Wang J; Wu FX
    Bioinformatics; 2018 Apr; 34(8):1428-1430. PubMed ID: 29186337
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.