223 related articles for article (PubMed ID: 23922837)
1. Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes.
Bohlin J; Brynildsrud O; Vesth T; Skjerve E; Ussery DW
PLoS One; 2013; 8(7):e69878. PubMed ID: 23922837
[TBL] [Abstract][Full Text] [Related]
2. Analysis of the relationship between genomic GC Content and patterns of base usage, codon usage and amino acid usage in prokaryotes: similar GC content adopts similar compositional frequencies regardless of the phylogenetic lineages.
Zhou HQ; Ning LW; Zhang HX; Guo FB
PLoS One; 2014; 9(9):e107319. PubMed ID: 25255224
[TBL] [Abstract][Full Text] [Related]
3. Across bacterial phyla, distantly-related genomes with similar genomic GC content have similar patterns of amino acid usage.
Lightfield J; Fram NR; Ely B
PLoS One; 2011 Mar; 6(3):e17677. PubMed ID: 21423704
[TBL] [Abstract][Full Text] [Related]
4. A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes.
Knight RD; Freeland SJ; Landweber LF
Genome Biol; 2001; 2(4):RESEARCH0010. PubMed ID: 11305938
[TBL] [Abstract][Full Text] [Related]
5. Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content.
Sandberg R; Bränden CI; Ernberg I; Cöster J
Gene; 2003 Jun; 311():35-42. PubMed ID: 12853136
[TBL] [Abstract][Full Text] [Related]
6. Investigations of oligonucleotide usage variance within and between prokaryotes.
Bohlin J; Skjerve E; Ussery DW
PLoS Comput Biol; 2008 Apr; 4(4):e1000057. PubMed ID: 18421372
[TBL] [Abstract][Full Text] [Related]
7. The genome of Campylobacter jejuni: codon and amino acid usage.
Fuglsang A
APMIS; 2003 Jun; 111(6):605-18. PubMed ID: 12969016
[TBL] [Abstract][Full Text] [Related]
8. Study of completed archaeal genomes and proteomes: hypothesis of strong mutational AT pressure existed in their common predecessor.
Khrustalev VV; Barkovsky EV
Genomics Proteomics Bioinformatics; 2010 Mar; 8(1):22-32. PubMed ID: 20451159
[TBL] [Abstract][Full Text] [Related]
9. Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content.
Singer GA; Hickey DA
Gene; 2003 Oct; 317(1-2):39-47. PubMed ID: 14604790
[TBL] [Abstract][Full Text] [Related]
10. Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes.
Wan XF; Xu D; Kleinhofs A; Zhou J
BMC Evol Biol; 2004 Jun; 4():19. PubMed ID: 15222899
[TBL] [Abstract][Full Text] [Related]
11. Inferring parameters shaping amino acid usage in prokaryotic genomes via Bayesian MCMC methods.
Naya H; Gianola D; Romero H; Urioste JI; Musto H
Mol Biol Evol; 2006 Jan; 23(1):203-11. PubMed ID: 16162860
[TBL] [Abstract][Full Text] [Related]
12. Seven GC-rich microbial genomes adopt similar codon usage patterns regardless of their phylogenetic lineages.
Chen LL; Zhang CT
Biochem Biophys Res Commun; 2003 Jun; 306(1):310-7. PubMed ID: 12788106
[TBL] [Abstract][Full Text] [Related]
13. CodonO: codon usage bias analysis within and across genomes.
Angellotti MC; Bhuiyan SB; Chen G; Wan XF
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W132-6. PubMed ID: 17537810
[TBL] [Abstract][Full Text] [Related]
14. Synonymous Codon Usages as an Evolutionary Dynamic for
Li Z; Hu W; Cao X; Liu P; Shang Y; Zhou J
Int J Mol Sci; 2018 Dec; 19(12):. PubMed ID: 30545112
[TBL] [Abstract][Full Text] [Related]
15. Hydrophobicity and aromaticity are primary factors shaping variation in amino acid usage of chicken proteome.
Rao Y; Wang Z; Chai X; Nie Q; Zhang X
PLoS One; 2014; 9(10):e110381. PubMed ID: 25329059
[TBL] [Abstract][Full Text] [Related]
16. Complex mutation and weak selection together determined the codon usage bias in bryophyte mitochondrial genomes.
Wang B; Liu J; Jin L; Feng XY; Chen JQ
J Integr Plant Biol; 2010 Dec; 52(12):1100-8. PubMed ID: 21106008
[TBL] [Abstract][Full Text] [Related]
17. The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes.
Bohlin J; Eldholm V; Pettersson JH; Brynildsrud O; Snipen L
BMC Genomics; 2017 Feb; 18(1):151. PubMed ID: 28187704
[TBL] [Abstract][Full Text] [Related]
18. Causes and implications of codon usage bias in RNA viruses.
Belalov IS; Lukashev AN
PLoS One; 2013; 8(2):e56642. PubMed ID: 23451064
[TBL] [Abstract][Full Text] [Related]
19. A general model of codon bias due to GC mutational bias.
Palidwor GA; Perkins TJ; Xia X
PLoS One; 2010 Oct; 5(10):e13431. PubMed ID: 21048949
[TBL] [Abstract][Full Text] [Related]
20. Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation.
López JL; Lozano MJ; Fabre ML; Lagares A
mBio; 2020 Jul; 11(4):. PubMed ID: 32694138
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]