152 related articles for article (PubMed ID: 23929875)
21. Bijective Diameters of Gene Tree Parsimony Costs.
Gorecki P; Eulenstein O
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(5):1723-1727. PubMed ID: 28792904
[TBL] [Abstract][Full Text] [Related]
22. Drawing rooted phylogenetic networks.
Huson DH
IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(1):103-9. PubMed ID: 19179703
[TBL] [Abstract][Full Text] [Related]
23. Walks on SPR neighborhoods.
Caceres AJ; Castillo J; Lee J; St John K
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(1):236-9. PubMed ID: 23702562
[TBL] [Abstract][Full Text] [Related]
24. Optimal gene trees from sequences and species trees using a soft interpretation of parsimony.
Berglund-Sonnhammer AC; Steffansson P; Betts MJ; Liberles DA
J Mol Evol; 2006 Aug; 63(2):240-50. PubMed ID: 16830091
[TBL] [Abstract][Full Text] [Related]
25. Clanistics: a multi-level perspective for harvesting unrooted gene trees.
Lapointe FJ; Lopez P; Boucher Y; Koenig J; Bapteste E
Trends Microbiol; 2010 Aug; 18(8):341-7. PubMed ID: 20605718
[TBL] [Abstract][Full Text] [Related]
26. DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony.
Wehe A; Bansal MS; Burleigh JG; Eulenstein O
Bioinformatics; 2008 Jul; 24(13):1540-1. PubMed ID: 18474508
[TBL] [Abstract][Full Text] [Related]
27. Improved parameterized complexity of the maximum agreement subtree and maximum compatible tree problems.
Berry V; Nicolas F
IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(3):289-302. PubMed ID: 17048466
[TBL] [Abstract][Full Text] [Related]
28. Estimating species trees from unrooted gene trees.
Liu L; Yu L
Syst Biol; 2011 Oct; 60(5):661-7. PubMed ID: 21447481
[TBL] [Abstract][Full Text] [Related]
29. Fair-balance paradox, star-tree paradox, and Bayesian phylogenetics.
Yang Z
Mol Biol Evol; 2007 Aug; 24(8):1639-55. PubMed ID: 17488737
[TBL] [Abstract][Full Text] [Related]
30. STRIDE: Species Tree Root Inference from Gene Duplication Events.
Emms DM; Kelly S
Mol Biol Evol; 2017 Dec; 34(12):3267-3278. PubMed ID: 29029342
[TBL] [Abstract][Full Text] [Related]
31. A polynomial-time algorithm computing lower and upper bounds of the rooted subtree prune and regraft distance.
Kannan L; Li H; Mushegian A
J Comput Biol; 2011 May; 18(5):743-57. PubMed ID: 21166560
[TBL] [Abstract][Full Text] [Related]
32. Inferring optimal species trees under gene duplication and loss.
Bayzid MS; Mirarab S; Warnow T
Pac Symp Biocomput; 2013; ():250-61. PubMed ID: 23424130
[TBL] [Abstract][Full Text] [Related]
33. Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.
Chaudhary R; Burleigh JG; Eulenstein O
BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S11. PubMed ID: 22759416
[TBL] [Abstract][Full Text] [Related]
34. Statistical inconsistency of the unrooted minimize deep coalescence criterion.
Alanzi AAR; Degnan JH
PLoS One; 2021; 16(5):e0251107. PubMed ID: 33970931
[TBL] [Abstract][Full Text] [Related]
35. Using max cut to enhance rooted trees consistency.
Snir S; Rao S
IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(4):323-33. PubMed ID: 17085842
[TBL] [Abstract][Full Text] [Related]
36. QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent.
Tabatabaee Y; Roch S; Warnow T
J Comput Biol; 2023 Nov; 30(11):1146-1181. PubMed ID: 37902986
[No Abstract] [Full Text] [Related]
37. Phylogenetic rooting using minimal ancestor deviation.
Tria FDK; Landan G; Dagan T
Nat Ecol Evol; 2017 Jun; 1():193. PubMed ID: 29388565
[TBL] [Abstract][Full Text] [Related]
38. Maximizing Deep Coalescence Cost.
Górecki P; Eulenstein O
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):231-42. PubMed ID: 26355521
[TBL] [Abstract][Full Text] [Related]
39. Unconstrained Diameters for Deep Coalescence.
Pawel Gorecki P; Paszek J; Eulenstein O
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(5):1002-1012. PubMed ID: 26887001
[TBL] [Abstract][Full Text] [Related]
40. Phylogenetic identification of lateral genetic transfer events.
Beiko RG; Hamilton N
BMC Evol Biol; 2006 Feb; 6():15. PubMed ID: 16472400
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
