237 related articles for article (PubMed ID: 23937070)
1. Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals.
Pooyaei Mehr SF; DeSalle R; Kao HT; Narechania A; Han Z; Tchernov D; Pieribone V; Gruber DF
BMC Genomics; 2013 Aug; 14():546. PubMed ID: 23937070
[TBL] [Abstract][Full Text] [Related]
2. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
[TBL] [Abstract][Full Text] [Related]
3. A comparative view of early development in the corals Favia lizardensis, Ctenactis echinata, and Acropora millepora - morphology, transcriptome, and developmental gene expression.
Okubo N; Hayward DC; Forêt S; Ball EE
BMC Evol Biol; 2016 Feb; 16():48. PubMed ID: 26924819
[TBL] [Abstract][Full Text] [Related]
4. Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx.
Meyer E; Aglyamova GV; Wang S; Buchanan-Carter J; Abrego D; Colbourne JK; Willis BL; Matz MV
BMC Genomics; 2009 May; 10():219. PubMed ID: 19435504
[TBL] [Abstract][Full Text] [Related]
5. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.
Liu S; Zhang Y; Zhou Z; Waldbieser G; Sun F; Lu J; Zhang J; Jiang Y; Zhang H; Wang X; Rajendran KV; Khoo L; Kucuktas H; Peatman E; Liu Z
BMC Genomics; 2012 Nov; 13():595. PubMed ID: 23127152
[TBL] [Abstract][Full Text] [Related]
6. Coral life history and symbiosis: functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata.
Schwarz JA; Brokstein PB; Voolstra C; Terry AY; Manohar CF; Miller DJ; Szmant AM; Coffroth MA; Medina M
BMC Genomics; 2008 Feb; 9():97. PubMed ID: 18298846
[TBL] [Abstract][Full Text] [Related]
7. Development of a transcriptomic database for 14 species of scleractinian corals.
Zhang Y; Chen Q; Xie JY; Yeung YH; Xiao B; Liao B; Xu J; Qiu JW
BMC Genomics; 2019 May; 20(1):387. PubMed ID: 31101011
[TBL] [Abstract][Full Text] [Related]
8. Re-analysis of the coral Acropora digitifera transcriptome reveals a complex lncRNAs-mRNAs interaction network implicated in Symbiodinium infection.
Huang C; Leng D; Sun S; Zhang XD
BMC Genomics; 2019 Jan; 20(1):48. PubMed ID: 30651068
[TBL] [Abstract][Full Text] [Related]
9. Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.
Mbandi SK; Hesse U; van Heusden P; Christoffels A
BMC Bioinformatics; 2015 Feb; 16(1):58. PubMed ID: 25880035
[TBL] [Abstract][Full Text] [Related]
10. A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems.
Tulin S; Aguiar D; Istrail S; Smith J
Evodevo; 2013; 4():16. PubMed ID: 23731568
[TBL] [Abstract][Full Text] [Related]
11. A snapshot of a coral "holobiont": a transcriptome assembly of the scleractinian coral, porites, captures a wide variety of genes from both the host and symbiotic zooxanthellae.
Shinzato C; Inoue M; Kusakabe M
PLoS One; 2014; 9(1):e85182. PubMed ID: 24454815
[TBL] [Abstract][Full Text] [Related]
12. A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences.
Schwartz TS; Tae H; Yang Y; Mockaitis K; Van Hemert JL; Proulx SR; Choi JH; Bronikowski AM
BMC Genomics; 2010 Dec; 11():694. PubMed ID: 21138572
[TBL] [Abstract][Full Text] [Related]
13. Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont.
Sunagawa S; Wilson EC; Thaler M; Smith ML; Caruso C; Pringle JR; Weis VM; Medina M; Schwarz JA
BMC Genomics; 2009 Jun; 10():258. PubMed ID: 19500365
[TBL] [Abstract][Full Text] [Related]
14. Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian.
Stefanik DJ; Lubinski TJ; Granger BR; Byrd AL; Reitzel AM; DeFilippo L; Lorenc A; Finnerty JR
BMC Genomics; 2014 Jan; 15():71. PubMed ID: 24467778
[TBL] [Abstract][Full Text] [Related]
15. Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform.
Zhang S; Sui Z; Chang L; Kang K; Ma J; Kong F; Zhou W; Wang J; Guo L; Geng H; Zhong J; Ma Q
Gene; 2014 Mar; 537(2):285-93. PubMed ID: 24440238
[TBL] [Abstract][Full Text] [Related]
16. PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms.
Gan RC; Chen TW; Wu TH; Huang PJ; Lee CC; Yeh YM; Chiu CH; Huang HD; Tang P
BMC Bioinformatics; 2016 Dec; 17(Suppl 19):513. PubMed ID: 28155708
[TBL] [Abstract][Full Text] [Related]
17. In depth annotation of the Anopheles gambiae mosquito midgut transcriptome.
Padrón A; Molina-Cruz A; Quinones M; Ribeiro JM; Ramphul U; Rodrigues J; Shen K; Haile A; Ramirez JL; Barillas-Mury C
BMC Genomics; 2014 Jul; 15(1):636. PubMed ID: 25073905
[TBL] [Abstract][Full Text] [Related]
18. De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes.
Birol I; Behsaz B; Hammond SA; Kucuk E; Veldhoen N; Helbing CC
PLoS One; 2015; 10(6):e0130720. PubMed ID: 26121473
[TBL] [Abstract][Full Text] [Related]
19. Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D.
Ladner JT; Barshis DJ; Palumbi SR
BMC Evol Biol; 2012 Nov; 12():217. PubMed ID: 23145489
[TBL] [Abstract][Full Text] [Related]
20. Whole-Genome Transcriptome Analyses of Native Symbionts Reveal Host Coral Genomic Novelties for Establishing Coral-Algae Symbioses.
Yoshioka Y; Yamashita H; Suzuki G; Zayasu Y; Tada I; Kanda M; Satoh N; Shoguchi E; Shinzato C
Genome Biol Evol; 2021 Jan; 13(1):. PubMed ID: 33185681
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]