191 related articles for article (PubMed ID: 23977879)
21. Communicating Structure and Function in Synthetic Biology Diagrams.
Beal J; Nguyen T; Gorochowski TE; Goñi-Moreno A; Scott-Brown J; McLaughlin JA; Madsen C; Aleritsch B; Bartley B; Bhakta S; Bissell M; Castillo Hair S; Clancy K; Luna A; Le Novère N; Palchick Z; Pocock M; Sauro H; Sexton JT; Tabor JJ; Voigt CA; Zundel Z; Myers C; Wipat A
ACS Synth Biol; 2019 Aug; 8(8):1818-1825. PubMed ID: 31348656
[TBL] [Abstract][Full Text] [Related]
22. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
Hucka M; Bergmann FT; Chaouiya C; Dräger A; Hoops S; Keating SM; König M; Novère NL; Myers CJ; Olivier BG; Sahle S; Schaff JC; Sheriff R; Smith LP; Waltemath D; Wilkinson DJ; Zhang F
J Integr Bioinform; 2019 Jun; 16(2):. PubMed ID: 31219795
[TBL] [Abstract][Full Text] [Related]
23. The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs.
Madsen C; McLaughlin JA; Mısırlı G; Pocock M; Flanagan K; Hallinan J; Wipat A
ACS Synth Biol; 2016 Jun; 5(6):487-97. PubMed ID: 27268205
[TBL] [Abstract][Full Text] [Related]
24. Sharing Structure and Function in Biological Design with SBOL 2.0.
Roehner N; Beal J; Clancy K; Bartley B; Misirli G; Grünberg R; Oberortner E; Pocock M; Bissell M; Madsen C; Nguyen T; Zhang M; Zhang Z; Zundel Z; Densmore D; Gennari JH; Wipat A; Sauro HM; Myers CJ
ACS Synth Biol; 2016 Jun; 5(6):498-506. PubMed ID: 27111421
[TBL] [Abstract][Full Text] [Related]
25. pySBOL: A Python Package for Genetic Design Automation and Standardization.
Bartley BA; Choi K; Samineni M; Zundel Z; Nguyen T; Myers CJ; Sauro HM
ACS Synth Biol; 2019 Jul; 8(7):1515-1518. PubMed ID: 30424601
[TBL] [Abstract][Full Text] [Related]
26. An Automated Biomodel Selection System (BMSS) for Gene Circuit Designs.
Yeoh JW; Ng KBI; Teh AY; Zhang J; Chee WKD; Poh CL
ACS Synth Biol; 2019 Jul; 8(7):1484-1497. PubMed ID: 31035759
[TBL] [Abstract][Full Text] [Related]
27. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.
Galdzicki M; Clancy KP; Oberortner E; Pocock M; Quinn JY; Rodriguez CA; Roehner N; Wilson ML; Adam L; Anderson JC; Bartley BA; Beal J; Chandran D; Chen J; Densmore D; Endy D; Grünberg R; Hallinan J; Hillson NJ; Johnson JD; Kuchinsky A; Lux M; Misirli G; Peccoud J; Plahar HA; Sirin E; Stan GB; Villalobos A; Wipat A; Gennari JH; Myers CJ; Sauro HM
Nat Biotechnol; 2014 Jun; 32(6):545-50. PubMed ID: 24911500
[TBL] [Abstract][Full Text] [Related]
28. Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL).
Roehner N; Bartley B; Beal J; McLaughlin J; Pocock M; Zhang M; Zundel Z; Myers CJ
ACS Synth Biol; 2019 Jul; 8(7):1519-1523. PubMed ID: 31260271
[TBL] [Abstract][Full Text] [Related]
29. Synthetic biology open language visual (SBOL visual) version 3.0.
Baig H; Fontanarossa P; McLaughlin J; Scott-Brown J; Vaidyanathan P; Gorochowski T; Misirli G; Beal J; Myers C
J Integr Bioinform; 2021 Oct; 18(3):. PubMed ID: 34668358
[TBL] [Abstract][Full Text] [Related]
30. Synthetic Biology Open Language (SBOL) Version 2.3.
Madsen C; Goñi Moreno A; P U; Palchick Z; Roehner N; Atallah C; Bartley B; Choi K; Cox RS; Gorochowski T; Grünberg R; Macklin C; McLaughlin J; Meng X; Nguyen T; Pocock M; Samineni M; Scott-Brown J; Tarter Y; Zhang M; Zhang Z; Zundel Z; Beal J; Bissell M; Clancy K; Gennari JH; Misirli G; Myers C; Oberortner E; Sauro H; Wipat A
J Integr Bioinform; 2019 Jun; 16(2):. PubMed ID: 31199770
[TBL] [Abstract][Full Text] [Related]
31. Synthetic biology open language visual (SBOL Visual) version 2.3.
Baig H; Fontanarossa P; Kulkarni V; McLaughlin J; Vaidyanathan P; Bartley B; Bhakta S; Bhatia S; Bissell M; Clancy K; Cox RS; Goñi Moreno A; Gorochowski T; Grunberg R; Lee J; Luna A; Madsen C; Misirli G; Nguyen T; Le Novere N; Palchick Z; Pocock M; Roehner N; Sauro H; Scott-Brown J; Sexton JT; Stan GB; Tabor JJ; Terry L; Vazquez Vilar M; Voigt CA; Wipat A; Zong D; Zundel Z; Beal J; Myers C
J Integr Bioinform; 2021 Jun; 18(3):. PubMed ID: 34098590
[TBL] [Abstract][Full Text] [Related]
32. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.
Madsen C; Goni Moreno A; Palchick Z; P U; Roehner N; Bartley B; Bhatia S; Bhakta S; Bissell M; Clancy K; Cox RS; Gorochowski T; Grunberg R; Luna A; McLaughlin J; Nguyen T; Le Novere N; Pocock M; Sauro H; Scott-Brown J; Sexton JT; Stan GB; Tabor JJ; Voigt CA; Zundel Z; Myers C; Beal J; Wipat A
J Integr Bioinform; 2019 Jun; 16(2):. PubMed ID: 31199768
[TBL] [Abstract][Full Text] [Related]
33. An automatic translation of SBML into Beta-binders.
Ciocchetta F; Priami C; Quaglia P
IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(1):80-90. PubMed ID: 18245877
[TBL] [Abstract][Full Text] [Related]
34. Synthetic Biology Open Language (SBOL) Version 2.0.0.
Bartley B; Beal J; Clancy K; Misirli G; Roehner N; Oberortner E; Pocock M; Bissell M; Madsen C; Nguyen T; Zhang Z; Gennari JH; Myers C; Wipat A; Sauro H
J Integr Bioinform; 2015 Sep; 12(2):272. PubMed ID: 26528570
[TBL] [Abstract][Full Text] [Related]
35. Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.
König M; Gleeson P; Golebiewski M; Gorochowski TE; Hucka M; Keating SM; Myers CJ; Nickerson DP; Sommer B; Waltemath D; Schreiber F
J Integr Bioinform; 2023 Mar; 20(1):. PubMed ID: 36989443
[TBL] [Abstract][Full Text] [Related]
36. Synthetic biology open language visual (SBOL visual) version 2.2.
Baig H; Fontanarrosa P; Kulkarni V; McLaughlin J; Vaidyanathan P; Bartley B; Bhatia S; Bhakta S; Bissell M; Clancy K; Cox RS; Moreno AG; Gorochowski T; Grunberg R; Luna A; Madsen C; Misirli G; Nguyen T; Le Novere N; Palchick Z; Pocock M; Roehner N; Sauro H; Scott-Brown J; Sexton JT; Stan GB; Tabor JJ; Vilar MV; Voigt CA; Wipat A; Zong D; Zundel Z; Beal J; Myers C
J Integr Bioinform; 2020 Jun; 17(2-3):. PubMed ID: 32543457
[TBL] [Abstract][Full Text] [Related]
37. neo4jsbml: import systems biology markup language data into the graph database Neo4j.
Gricourt G; Duigou T; Dérozier S; Faulon JL
PeerJ; 2024; 12():e16726. PubMed ID: 38250720
[TBL] [Abstract][Full Text] [Related]
38. A Visual Language for Protein Design.
Cox RS; McLaughlin JA; Grünberg R; Beal J; Wipat A; Sauro HM
ACS Synth Biol; 2017 Jul; 6(7):1120-1123. PubMed ID: 28173698
[TBL] [Abstract][Full Text] [Related]
39. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
Zi Z; Klipp E
Bioinformatics; 2006 Nov; 22(21):2704-5. PubMed ID: 16926221
[TBL] [Abstract][Full Text] [Related]
40. sbml-diff: A Tool for Visually Comparing SBML Models in Synthetic Biology.
Scott-Brown J; Papachristodoulou A
ACS Synth Biol; 2017 Jul; 6(7):1225-1229. PubMed ID: 28035814
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
