These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

139 related articles for article (PubMed ID: 23982924)

  • 1. Stabilization of duplex DNA and RNA by dangling ends studied by free energy simulations.
    Kara M; Zacharias M
    Biopolymers; 2014 Apr; 101(4):418-27. PubMed ID: 23982924
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A uniform mechanism correlating dangling-end stabilization and stacking geometry.
    Isaksson J; Chattopadhyaya J
    Biochemistry; 2005 Apr; 44(14):5390-401. PubMed ID: 15807532
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Long RNA dangling end has large energetic contribution to duplex stability.
    Ohmichi T; Nakano S; Miyoshi D; Sugimoto N
    J Am Chem Soc; 2002 Sep; 124(35):10367-72. PubMed ID: 12197739
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Dangling ends perturb the stability of RNA duplexes responsive to surrounding conditions.
    Tateishi-Karimata H; Pramanik S; Nakano S; Miyoshi D; Sugimoto N
    ChemMedChem; 2014 Sep; 9(9):2150-5. PubMed ID: 25070089
    [TBL] [Abstract][Full Text] [Related]  

  • 5. 3' terminal nucleotides determine thermodynamic stabilities of mismatches at the ends of RNA helices.
    Clanton-Arrowood K; McGurk J; Schroeder SJ
    Biochemistry; 2008 Dec; 47(50):13418-27. PubMed ID: 19053257
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The influence of various modified nucleotides placed as 3'-dangling end on thermal stability of RNA duplexes.
    Ziomek K; Kierzek E; Biała E; Kierzek R
    Biophys Chem; 2002 Jun; 97(2-3):243-9. PubMed ID: 12050013
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Stability of 3' double nucleotide overhangs that model the 3' ends of siRNA.
    O'Toole AS; Miller S; Serra MJ
    RNA; 2005 Apr; 11(4):512-6. PubMed ID: 15769878
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The dynamic structural basis of differential enhancement of conformational stability by 5'- and 3'-dangling ends in RNA.
    Liu JD; Zhao L; Xia T
    Biochemistry; 2008 Jun; 47(22):5962-75. PubMed ID: 18457418
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Recognition of RNA by amide modified backbone nucleic acids: molecular dynamics simulations of DNA-RNA hybrids in aqueous solution.
    Nina M; Fonné-Pfister R; Beaudegnies R; Chekatt H; Jung PM; Murphy-Kessabi F; De Mesmaeker A; Wendeborn S
    J Am Chem Soc; 2005 Apr; 127(16):6027-38. PubMed ID: 15839703
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Thermodynamic stability of the 5' dangling-ended DNA hairpins formed from sequences 5'-(XY)2GGATAC(T)4GTATCC-3', where X, Y = A, T, G, C.
    Doktycz MJ; Paner TM; Amaratunga M; Benight AS
    Biopolymers; 1990; 30(7-8):829-45. PubMed ID: 2275982
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Thermodynamic parameters for DNA sequences with dangling ends.
    Bommarito S; Peyret N; SantaLucia J
    Nucleic Acids Res; 2000 May; 28(9):1929-34. PubMed ID: 10756193
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Thermodynamics of DNA-RNA heteroduplex formation: effects of locked nucleic acid nucleotides incorporated into the DNA strand.
    Kaur H; Wengel J; Maiti S
    Biochemistry; 2008 Jan; 47(4):1218-27. PubMed ID: 18171024
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Free energy simulations of uncatalyzed DNA replication fidelity: structure and stability of T.G and dTTP.G terminal DNA mismatches flanked by a single dangling nucleotide.
    Bren U; Martínek V; Florian J
    J Phys Chem B; 2006 Jun; 110(21):10557-66. PubMed ID: 16722767
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid.
    Sugimoto N; Kierzek R; Turner DH
    Biochemistry; 1987 Jul; 26(14):4554-8. PubMed ID: 2444250
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Conformational transitions in RNA single uridine and adenosine bulge structures: a molecular dynamics free energy simulation study.
    Barthel A; Zacharias M
    Biophys J; 2006 Apr; 90(7):2450-62. PubMed ID: 16399833
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Cy3 and Cy5 dyes attached to oligonucleotide terminus stabilize DNA duplexes: predictive thermodynamic model.
    Moreira BG; You Y; Owczarzy R
    Biophys Chem; 2015 Mar; 198():36-44. PubMed ID: 25645886
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular dynamics simulations of a r(GA12G).d(CT12C) hybrid duplex.
    Fritsch V; Wolf RM
    J Biomol Struct Dyn; 1994 Jun; 11(6):1161-74. PubMed ID: 7524540
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The 5-Me of thyminyl (T) interaction with the neighboring nucleobases dictate the relative stability of isosequential DNA-RNA hybrid duplexes.
    Chatterjee S; Pathmasiri W; Chattopadhyaya J
    Org Biomol Chem; 2005 Nov; 3(21):3911-5. PubMed ID: 16240008
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparison of intrinsic stacking energies of ten unique dinucleotide steps in A-RNA and B-DNA duplexes. Can we determine correct order of stability by quantum-chemical calculations?
    Svozil D; Hobza P; Sponer J
    J Phys Chem B; 2010 Jan; 114(2):1191-203. PubMed ID: 20000584
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The solution structure of a DNA*RNA duplex containing 5-propynyl U and C; comparison with 5-Me modifications.
    Gyi JI; Gao D; Conn GL; Trent JO; Brown T; Lane AN
    Nucleic Acids Res; 2003 May; 31(10):2683-93. PubMed ID: 12736318
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.