These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
138 related articles for article (PubMed ID: 23987304)
21. SPECTRE: a suite of phylogenetic tools for reticulate evolution. Bastkowski S; Mapleson D; Spillner A; Wu T; Balvociute M; Moulton V Bioinformatics; 2018 Mar; 34(6):1056-1057. PubMed ID: 29186450 [TBL] [Abstract][Full Text] [Related]
22. BEDTools: a flexible suite of utilities for comparing genomic features. Quinlan AR; Hall IM Bioinformatics; 2010 Mar; 26(6):841-2. PubMed ID: 20110278 [TBL] [Abstract][Full Text] [Related]
23. Memes: A motif analysis environment in R using tools from the MEME Suite. Nystrom SL; McKay DJ PLoS Comput Biol; 2021 Sep; 17(9):e1008991. PubMed ID: 34570758 [TBL] [Abstract][Full Text] [Related]
24. BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data. Steenwyk JL; Buida TJ; Gonçalves C; Goltz DC; Morales G; Mead ME; LaBella AL; Chavez CM; Schmitz JE; Hadjifrangiskou M; Li Y; Rokas A Genetics; 2022 Jul; 221(3):. PubMed ID: 35536198 [TBL] [Abstract][Full Text] [Related]
29. Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties. Bergstrand LH; Neufeld JD; Doxey AC Bioinformatics; 2019 Dec; 35(23):5063-5065. PubMed ID: 31240307 [TBL] [Abstract][Full Text] [Related]
30. Explore, edit and leverage genomic annotations using Python GTF toolkit. Lopez F; Charbonnier G; Kermezli Y; Belhocine M; Ferré Q; Zweig N; Aribi M; Gonzalez A; Spicuglia S; Puthier D Bioinformatics; 2019 Sep; 35(18):3487-3488. PubMed ID: 30768152 [TBL] [Abstract][Full Text] [Related]
31. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC. Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844 [TBL] [Abstract][Full Text] [Related]
32. BuddySuite: Command-Line Toolkits for Manipulating Sequences, Alignments, and Phylogenetic Trees. Bond SR; Keat KE; Barreira SN; Baxevanis AD Mol Biol Evol; 2017 Jun; 34(6):1543-1546. PubMed ID: 28333216 [TBL] [Abstract][Full Text] [Related]
33. snpGeneSets: An R Package for Genome-Wide Study Annotation. Mei H; Li L; Jiang F; Simino J; Griswold M; Mosley T; Liu S G3 (Bethesda); 2016 Dec; 6(12):4087-4095. PubMed ID: 27807048 [TBL] [Abstract][Full Text] [Related]
34. wEMBOSS: a web interface for EMBOSS. Sarachu M; Colet M Bioinformatics; 2005 Feb; 21(4):540-1. PubMed ID: 15388516 [TBL] [Abstract][Full Text] [Related]
35. BamTools: a C++ API and toolkit for analyzing and managing BAM files. Barnett DW; Garrison EK; Quinlan AR; Strömberg MP; Marth GT Bioinformatics; 2011 Jun; 27(12):1691-2. PubMed ID: 21493652 [TBL] [Abstract][Full Text] [Related]
36. Analysis Tool Web Services from the EMBL-EBI. McWilliam H; Li W; Uludag M; Squizzato S; Park YM; Buso N; Cowley AP; Lopez R Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W597-600. PubMed ID: 23671338 [TBL] [Abstract][Full Text] [Related]
37. BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences. Khan A; Riudavets Puig R; Boddie P; Mathelier A Bioinformatics; 2021 Jul; 37(11):1607-1609. PubMed ID: 33135764 [TBL] [Abstract][Full Text] [Related]