125 related articles for article (PubMed ID: 23990418)
1. Multiple alignment-free sequence comparison.
Ren J; Song K; Sun F; Deng M; Reinert G
Bioinformatics; 2013 Nov; 29(21):2690-8. PubMed ID: 23990418
[TBL] [Abstract][Full Text] [Related]
2. Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics.
Ren J; Song K; Deng M; Reinert G; Cannon CH; Sun F
Bioinformatics; 2016 Apr; 32(7):993-1000. PubMed ID: 26130573
[TBL] [Abstract][Full Text] [Related]
3. K2 and K2*: efficient alignment-free sequence similarity measurement based on Kendall statistics.
Lin J; Adjeroh DA; Jiang BH; Jiang Y
Bioinformatics; 2018 May; 34(10):1682-1689. PubMed ID: 29253072
[TBL] [Abstract][Full Text] [Related]
4. A statistical method for alignment-free comparison of regulatory sequences.
Kantorovitz MR; Robinson GE; Sinha S
Bioinformatics; 2007 Jul; 23(13):i249-55. PubMed ID: 17646303
[TBL] [Abstract][Full Text] [Related]
5. DISCOVER: a feature-based discriminative method for motif search in complex genomes.
Fu W; Ray P; Xing EP
Bioinformatics; 2009 Jun; 25(12):i321-9. PubMed ID: 19478006
[TBL] [Abstract][Full Text] [Related]
6. Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.
He X; Ling X; Sinha S
PLoS Comput Biol; 2009 Mar; 5(3):e1000299. PubMed ID: 19293946
[TBL] [Abstract][Full Text] [Related]
7. Alignment-free sequence comparison (II): theoretical power of comparison statistics.
Wan L; Reinert G; Sun F; Waterman MS
J Comput Biol; 2010 Nov; 17(11):1467-90. PubMed ID: 20973742
[TBL] [Abstract][Full Text] [Related]
8. A non-independent energy-based multiple sequence alignment improves prediction of transcription factor binding sites.
Salama RA; Stekel DJ
Bioinformatics; 2013 Nov; 29(21):2699-704. PubMed ID: 23990411
[TBL] [Abstract][Full Text] [Related]
9. On the comparison of regulatory sequences with multiple resolution Entropic Profiles.
Comin M; Antonello M
BMC Bioinformatics; 2016 Mar; 17():130. PubMed ID: 26987840
[TBL] [Abstract][Full Text] [Related]
10. BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences.
Meng H; Banerjee A; Zhou L
Bioinformatics; 2007 Dec; 23(23):3249-50. PubMed ID: 17660203
[TBL] [Abstract][Full Text] [Related]
11. Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.
Göke J; Schulz MH; Lasserre J; Vingron M
Bioinformatics; 2012 Mar; 28(5):656-63. PubMed ID: 22247280
[TBL] [Abstract][Full Text] [Related]
12. Simultaneous alignment and annotation of cis-regulatory regions.
Bais AS; Grossmann S; Vingron M
Bioinformatics; 2007 Jan; 23(2):e44-9. PubMed ID: 17237103
[TBL] [Abstract][Full Text] [Related]
13. Integrating alignment-based and alignment-free sequence similarity measures for biological sequence classification.
Borozan I; Watt S; Ferretti V
Bioinformatics; 2015 May; 31(9):1396-404. PubMed ID: 25573913
[TBL] [Abstract][Full Text] [Related]
14. Searching for statistically significant regulatory modules.
Bailey TL; Noble WS
Bioinformatics; 2003 Oct; 19 Suppl 2():ii16-25. PubMed ID: 14534166
[TBL] [Abstract][Full Text] [Related]
15. MAP2: multiple alignment of syntenic genomic sequences.
Ye L; Huang X
Nucleic Acids Res; 2005; 33(1):162-70. PubMed ID: 15640451
[TBL] [Abstract][Full Text] [Related]
16. A survey and evaluations of histogram-based statistics in alignment-free sequence comparison.
Luczak BB; James BT; Girgis HZ
Brief Bioinform; 2019 Jul; 20(4):1222-1237. PubMed ID: 29220512
[TBL] [Abstract][Full Text] [Related]
17. The twilight zone of cis element alignments.
Sebastian A; Contreras-Moreira B
Nucleic Acids Res; 2013 Feb; 41(3):1438-49. PubMed ID: 23268451
[TBL] [Abstract][Full Text] [Related]
18. Computational detection of cis -regulatory modules.
Aerts S; Van Loo P; Thijs G; Moreau Y; De Moor B
Bioinformatics; 2003 Oct; 19 Suppl 2():ii5-14. PubMed ID: 14534164
[TBL] [Abstract][Full Text] [Related]
19. BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.
De Witte D; Van de Velde J; Decap D; Van Bel M; Audenaert P; Demeester P; Dhoedt B; Vandepoele K; Fostier J
Bioinformatics; 2015 Dec; 31(23):3758-66. PubMed ID: 26254488
[TBL] [Abstract][Full Text] [Related]
20. MCAST: scanning for cis-regulatory motif clusters.
Grant CE; Johnson J; Bailey TL; Noble WS
Bioinformatics; 2016 Apr; 32(8):1217-9. PubMed ID: 26704599
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]