These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 23995392)

  • 21. SOAPindel: efficient identification of indels from short paired reads.
    Li S; Li R; Li H; Lu J; Li Y; Bolund L; Schierup MH; Wang J
    Genome Res; 2013 Jan; 23(1):195-200. PubMed ID: 22972939
    [TBL] [Abstract][Full Text] [Related]  

  • 22. RIFRAF: a frame-resolving consensus algorithm.
    Eren K; Murrell B
    Bioinformatics; 2018 Nov; 34(22):3817-3824. PubMed ID: 29850783
    [TBL] [Abstract][Full Text] [Related]  

  • 23. MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels.
    Marschall T; Hajirasouliha I; Schönhuth A
    Bioinformatics; 2013 Dec; 29(24):3143-50. PubMed ID: 24072733
    [TBL] [Abstract][Full Text] [Related]  

  • 24. BOAT: Basic Oligonucleotide Alignment Tool.
    Zhao SQ; Wang J; Zhang L; Li JT; Gu X; Gao G; Wei L
    BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S2. PubMed ID: 19958483
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Uncovering missed indels by leveraging unmapped reads.
    Hasan MS; Wu X; Zhang L
    Sci Rep; 2019 Jul; 9(1):11093. PubMed ID: 31366961
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker.
    Willet CE; Haase B; Charleston MA; Wade CM
    Bioinformatics; 2015 Feb; 31(4):599-601. PubMed ID: 25336502
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Accurate estimation of short read mapping quality for next-generation genome sequencing.
    Ruffalo M; Koyutürk M; Ray S; LaFramboise T
    Bioinformatics; 2012 Sep; 28(18):i349-i355. PubMed ID: 22962451
    [TBL] [Abstract][Full Text] [Related]  

  • 28. ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly.
    Yang R; Nelson AC; Henzler C; Thyagarajan B; Silverstein KA
    Genome Med; 2015 Dec; 7():127. PubMed ID: 26643039
    [TBL] [Abstract][Full Text] [Related]  

  • 29. An improved encoding of genetic variation in a Burrows-Wheeler transform.
    Büchler T; Ohlebusch E
    Bioinformatics; 2020 Mar; 36(5):1413-1419. PubMed ID: 31613311
    [TBL] [Abstract][Full Text] [Related]  

  • 30. WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.
    Patterson M; Marschall T; Pisanti N; van Iersel L; Stougie L; Klau GW; Schönhuth A
    J Comput Biol; 2015 Jun; 22(6):498-509. PubMed ID: 25658651
    [TBL] [Abstract][Full Text] [Related]  

  • 31. BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs.
    Heydari M; Miclotte G; Van de Peer Y; Fostier J
    BMC Bioinformatics; 2018 Sep; 19(1):311. PubMed ID: 30180801
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Demonstrating the utility of flexible sequence queries against indexed short reads with FlexTyper.
    Richmond PA; Kaye AM; Kounkou GJ; Av-Shalom TV; Wasserman WW
    PLoS Comput Biol; 2021 Mar; 17(3):e1008815. PubMed ID: 33750951
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph.
    Martiniano R; Garrison E; Jones ER; Manica A; Durbin R
    Genome Biol; 2020 Sep; 21(1):250. PubMed ID: 32943086
    [TBL] [Abstract][Full Text] [Related]  

  • 34. SRmapper: a fast and sensitive genome-hashing alignment tool.
    Gontarz PM; Berger J; Wong CF
    Bioinformatics; 2013 Feb; 29(3):316-21. PubMed ID: 23267171
    [TBL] [Abstract][Full Text] [Related]  

  • 35. BFAST: an alignment tool for large scale genome resequencing.
    Homer N; Merriman B; Nelson SF
    PLoS One; 2009 Nov; 4(11):e7767. PubMed ID: 19907642
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
    Edge P; Bansal V
    Nat Commun; 2019 Oct; 10(1):4660. PubMed ID: 31604920
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A nonhomogeneous hidden markov model for gene mapping based on next-generation sequencing data.
    Ghavidel FZ; Claesen J; Burzykowski T
    J Comput Biol; 2015 Feb; 22(2):178-88. PubMed ID: 25611462
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken.
    Ni G; Strom TM; Pausch H; Reimer C; Preisinger R; Simianer H; Erbe M
    BMC Genomics; 2015 Oct; 16():824. PubMed ID: 26486989
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Ψ-RA: a parallel sparse index for genomic read alignment.
    Oğuzhan Külekci M; Hon WK; Shah R; Scott Vitter J; Xu B
    BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S7. PubMed ID: 21989248
    [TBL] [Abstract][Full Text] [Related]  

  • 40. SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.
    Kockan C; Hach F; Sarrafi I; Bell RH; McConeghy B; Beja K; Haegert A; Wyatt AW; Volik SV; Chi KN; Collins CC; Sahinalp SC
    Bioinformatics; 2017 Jan; 33(1):26-34. PubMed ID: 27531099
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.