BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

141 related articles for article (PubMed ID: 24001726)

  • 1. Performance modelling of parallel BLAST using Intel and PGI compilers on an infiniband-based HPC cluster.
    Al-Mulhem M; Al-Shaikh R
    Int J Bioinform Res Appl; 2013; 9(5):534-46. PubMed ID: 24001726
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters.
    Cheng T; Chin PJ; Cha K; Petrick N; Mikailov M
    BMC Bioinformatics; 2022 Dec; 23(1):544. PubMed ID: 36526957
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters.
    Lan H; Chan Y; Xu K; Schmidt B; Peng S; Liu W
    BMC Bioinformatics; 2016 Jul; 17 Suppl 9(Suppl 9):267. PubMed ID: 27455061
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters.
    Wang C; Lefkowitz EJ
    BMC Bioinformatics; 2004 Oct; 5():171. PubMed ID: 15511296
    [TBL] [Abstract][Full Text] [Related]  

  • 5. HBLAST: Parallelised sequence similarity--A Hadoop MapReducable basic local alignment search tool.
    O'Driscoll A; Belogrudov V; Carroll J; Kropp K; Walsh P; Ghazal P; Sleator RD
    J Biomed Inform; 2015 Apr; 54():58-64. PubMed ID: 25625550
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Divide and Conquer (DC) BLAST: fast and easy BLAST execution within HPC environments.
    Yim WC; Cushman JC
    PeerJ; 2017; 5():e3486. PubMed ID: 28652936
    [TBL] [Abstract][Full Text] [Related]  

  • 7. muBLASTP: database-indexed protein sequence search on multicore CPUs.
    Zhang J; Misra S; Wang H; Feng WC
    BMC Bioinformatics; 2016 Nov; 17(1):443. PubMed ID: 27809763
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences.
    Palkowski M; Bielecki W
    J Comput Biol; 2018 Oct; 25(10):1106-1119. PubMed ID: 29993269
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Parallelisation of the blast algorithm.
    Qi Y; Lin F
    Cell Mol Biol Lett; 2005; 10(2):281-5. PubMed ID: 16010293
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library.
    Nowicki M; Bzhalava D; BaŁa P
    J Comput Biol; 2018 Aug; 25(8):871-881. PubMed ID: 30004240
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BLASTP-ACC: Parallel Architecture and Hardware Accelerator Design for BLAST-Based Protein Sequence Alignment.
    Li YC; Lu YC
    IEEE Trans Biomed Circuits Syst; 2019 Dec; 13(6):1771-1782. PubMed ID: 31581096
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Using Grid technology for computationally intensive applied bioinformatics analyses.
    Andrade J; Berglund L; Uhlén M; Odeberg J
    In Silico Biol; 2006; 6(6):495-504. PubMed ID: 17518760
    [TBL] [Abstract][Full Text] [Related]  

  • 13. H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs.
    Ye W; Chen Y; Zhang Y; Xu Y
    Bioinformatics; 2017 Apr; 33(8):1130-1138. PubMed ID: 28087515
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Analysing the performance of personal computers based on Intel microprocessors for sequence aligning bioinformatics applications.
    Nair PS; John EB
    Int J Bioinform Res Appl; 2007; 3(2):187-205. PubMed ID: 18048188
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Scaling bioinformatics applications on HPC.
    Mikailov M; Luo FJ; Barkley S; Valleru L; Whitney S; Liu Z; Thakkar S; Tong W; Petrick N
    BMC Bioinformatics; 2017 Dec; 18(Suppl 14):501. PubMed ID: 29297287
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).
    Dowd SE; Zaragoza J; Rodriguez JR; Oliver MJ; Payton PR
    BMC Bioinformatics; 2005 Apr; 6():93. PubMed ID: 15819992
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A new seed selection algorithm that maximizes local structural similarity in proteins.
    Altun G; Zhong W; Pan Y; Tai PC; Harrison RW
    Conf Proc IEEE Eng Med Biol Soc; 2006; 2006():5822-5. PubMed ID: 17946336
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Distributed sequence alignment applications for the public computing architecture.
    Pellicer S; Chen G; Chan KC; Pan Y
    IEEE Trans Nanobioscience; 2008 Mar; 7(1):35-43. PubMed ID: 18334454
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
    Agrawal A; Huang X
    Bioinformatics; 2009 Apr; 25(8):1082-3. PubMed ID: 19251771
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Implementations of BLAST for parallel computers.
    Jülich A
    Comput Appl Biosci; 1995 Feb; 11(1):3-6. PubMed ID: 7796273
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.