193 related articles for article (PubMed ID: 24002111)
1. A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.
Kojima K; Nariai N; Mimori T; Takahashi M; Yamaguchi-Kabata Y; Sato Y; Nagasaki M
Bioinformatics; 2013 Nov; 29(22):2835-43. PubMed ID: 24002111
[TBL] [Abstract][Full Text] [Related]
2. Genotype calling and haplotyping in parent-offspring trios.
Chen W; Li B; Zeng Z; Sanna S; Sidore C; Busonero F; Kang HM; Li Y; Abecasis GR
Genome Res; 2013 Jan; 23(1):142-51. PubMed ID: 23064751
[TBL] [Abstract][Full Text] [Related]
3. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
[TBL] [Abstract][Full Text] [Related]
4. A Long-Read Sequencing Approach for Direct Haplotype Phasing in Clinical Settings.
Maestri S; Maturo MG; Cosentino E; Marcolungo L; Iadarola B; Fortunati E; Rossato M; Delledonne M
Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271988
[TBL] [Abstract][Full Text] [Related]
5. Integrating dilution-based sequencing and population genotypes for single individual haplotyping.
Matsumoto H; Kiryu H
BMC Genomics; 2014 Aug; 15(1):733. PubMed ID: 25167975
[TBL] [Abstract][Full Text] [Related]
6. Read-based phasing of related individuals.
Garg S; Martin M; Marschall T
Bioinformatics; 2016 Jun; 32(12):i234-i242. PubMed ID: 27307622
[TBL] [Abstract][Full Text] [Related]
7. On the design and analysis of next-generation sequencing genotyping for a cohort with haplotype-informative reads.
Zhi D; Liu N; Zhang K
Methods; 2015 Jun; 79-80():41-6. PubMed ID: 25644447
[TBL] [Abstract][Full Text] [Related]
8. Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
Shafin K; Pesout T; Chang PC; Nattestad M; Kolesnikov A; Goel S; Baid G; Kolmogorov M; Eizenga JM; Miga KH; Carnevali P; Jain M; Carroll A; Paten B
Nat Methods; 2021 Nov; 18(11):1322-1332. PubMed ID: 34725481
[TBL] [Abstract][Full Text] [Related]
9. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
Edge P; Bansal V
Nat Commun; 2019 Oct; 10(1):4660. PubMed ID: 31604920
[TBL] [Abstract][Full Text] [Related]
10. HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.
Beretta S; Patterson MD; Zaccaria S; Della Vedova G; Bonizzoni P
BMC Bioinformatics; 2018 Jul; 19(1):252. PubMed ID: 29970002
[TBL] [Abstract][Full Text] [Related]
11. A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi-source DNA mixture.
Wang X; Muenzler M; King J; Liu M; Li H; Budowle B; Ge J
Electrophoresis; 2024 May; 45(9-10):877-884. PubMed ID: 38196015
[TBL] [Abstract][Full Text] [Related]
12. Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads.
Zhang K; Zhi D
Bioinformatics; 2013 Oct; 29(19):2427-34. PubMed ID: 23943637
[TBL] [Abstract][Full Text] [Related]
13. Whole-genome haplotyping using long reads and statistical methods.
Kuleshov V; Xie D; Chen R; Pushkarev D; Ma Z; Blauwkamp T; Kertesz M; Snyder M
Nat Biotechnol; 2014 Mar; 32(3):261-266. PubMed ID: 24561555
[TBL] [Abstract][Full Text] [Related]
14. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
[TBL] [Abstract][Full Text] [Related]
15. trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios.
Miller DB; Piccolo SR
BMC Bioinformatics; 2021 Nov; 22(1):559. PubMed ID: 34809557
[TBL] [Abstract][Full Text] [Related]
16. Octopus: Genotyping and Haplotyping in Diverse Experimental Designs.
Cooke DP
Methods Mol Biol; 2022; 2493():29-51. PubMed ID: 35751807
[TBL] [Abstract][Full Text] [Related]
17. Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals.
Cheng AY; Teo YY; Ong RT
Bioinformatics; 2014 Jun; 30(12):1707-13. PubMed ID: 24558117
[TBL] [Abstract][Full Text] [Related]
18. Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees.
Whalen A; Ros-Freixedes R; Wilson DL; Gorjanc G; Hickey JM
Genet Sel Evol; 2018 Dec; 50(1):67. PubMed ID: 30563452
[TBL] [Abstract][Full Text] [Related]
19. Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation.
Brouard JS; Boyle B; Ibeagha-Awemu EM; Bissonnette N
BMC Genet; 2017 Apr; 18(1):32. PubMed ID: 28381212
[TBL] [Abstract][Full Text] [Related]
20. PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies.
Liao P; Satten GA; Hu YJ
Genet Epidemiol; 2017 Jul; 41(5):375-387. PubMed ID: 28560825
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]