These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

172 related articles for article (PubMed ID: 24009670)

  • 1. Replica exchange improves sampling in low-resolution docking stage of RosettaDock.
    Zhang Z; Lange OF
    PLoS One; 2013; 8(8):e72096. PubMed ID: 24009670
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A combination of rescoring and refinement significantly improves protein docking performance.
    Pierce B; Weng Z
    Proteins; 2008 Jul; 72(1):270-9. PubMed ID: 18214977
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock.
    Daily MD; Masica D; Sivasubramanian A; Somarouthu S; Gray JJ
    Proteins; 2005 Aug; 60(2):181-6. PubMed ID: 15981262
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Performance of ZDOCK in CAPRI rounds 20-26.
    Vreven T; Pierce BG; Hwang H; Weng Z
    Proteins; 2013 Dec; 81(12):2175-82. PubMed ID: 24123140
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Induced fit with replica exchange improves protein complex structure prediction.
    Harmalkar A; Mahajan SP; Gray JJ
    PLoS Comput Biol; 2022 Jun; 18(6):e1010124. PubMed ID: 35658008
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoys.
    Liang S; Liu S; Zhang C; Zhou Y
    Proteins; 2007 Nov; 69(2):244-53. PubMed ID: 17623864
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The RosettaDock server for local protein-protein docking.
    Lyskov S; Gray JJ
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W233-8. PubMed ID: 18442991
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Flexible protein-protein docking based on Best-First search algorithm.
    Noy E; Goldblum A
    J Comput Chem; 2010 Jul; 31(9):1929-43. PubMed ID: 20087902
    [TBL] [Abstract][Full Text] [Related]  

  • 10. How different from random are docking predictions when ranked by scoring functions?
    Feliu E; Oliva B
    Proteins; 2010 Dec; 78(16):3376-85. PubMed ID: 20848549
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Shape complementarity of protein-protein complexes at multiple resolutions.
    Zhang Q; Sanner M; Olson AJ
    Proteins; 2009 May; 75(2):453-67. PubMed ID: 18837463
    [TBL] [Abstract][Full Text] [Related]  

  • 12. M-ZDOCK: a grid-based approach for Cn symmetric multimer docking.
    Pierce B; Tong W; Weng Z
    Bioinformatics; 2005 Apr; 21(8):1472-8. PubMed ID: 15613396
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Monte Carlo replica-exchange based ensemble docking of protein conformations.
    Zhang Z; Ehmann U; Zacharias M
    Proteins; 2017 May; 85(5):924-937. PubMed ID: 28168752
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein-protein docking with F(2)Dock 2.0 and GB-rerank.
    Chowdhury R; Rasheed M; Keidel D; Moussalem M; Olson A; Sanner M; Bajaj C
    PLoS One; 2013; 8(3):e51307. PubMed ID: 23483883
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Multi-LZerD: multiple protein docking for asymmetric complexes.
    Esquivel-Rodríguez J; Yang YD; Kihara D
    Proteins; 2012 Jul; 80(7):1818-33. PubMed ID: 22488467
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CyClus: a fast, comprehensive cylindrical interface approximation clustering/reranking method for rigid-body protein-protein docking decoys.
    Omori S; Kitao A
    Proteins; 2013 Jun; 81(6):1005-16. PubMed ID: 23344972
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ReplicOpter: a replicate optimizer for flexible docking.
    Demerdash ON; Buyan A; Mitchell JC
    Proteins; 2010 Nov; 78(15):3156-65. PubMed ID: 20715288
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein-protein docking using region-based 3D Zernike descriptors.
    Venkatraman V; Yang YD; Sael L; Kihara D
    BMC Bioinformatics; 2009 Dec; 10():407. PubMed ID: 20003235
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Pre- and post-docking sampling of conformational changes using ClustENM and HADDOCK for protein-protein and protein-DNA systems.
    Kurkcuoglu Z; Bonvin AMJJ
    Proteins; 2020 Feb; 88(2):292-306. PubMed ID: 31441121
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protein-protein docking with backbone flexibility.
    Wang C; Bradley P; Baker D
    J Mol Biol; 2007 Oct; 373(2):503-19. PubMed ID: 17825317
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.