205 related articles for article (PubMed ID: 24011432)
1. Efficient alignment of RNA secondary structures using sparse dynamic programming.
Zhong C; Zhang S
BMC Bioinformatics; 2013 Sep; 14():269. PubMed ID: 24011432
[TBL] [Abstract][Full Text] [Related]
2. A memory efficient method for structure-based RNA multiple alignment.
DeBlasio D; Bruand J; Zhang S
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):1-11. PubMed ID: 21576754
[TBL] [Abstract][Full Text] [Related]
3. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
[TBL] [Abstract][Full Text] [Related]
4. RNA structural alignments, part II: non-Sankoff approaches for structural alignments.
Asai K; Hamada M
Methods Mol Biol; 2014; 1097():291-301. PubMed ID: 24639165
[TBL] [Abstract][Full Text] [Related]
5. TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs.
Tan Z; Fu Y; Sharma G; Mathews DH
Nucleic Acids Res; 2017 Nov; 45(20):11570-11581. PubMed ID: 29036420
[TBL] [Abstract][Full Text] [Related]
6. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
Washietl S; Bernhart SH; Kellis M
Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
[TBL] [Abstract][Full Text] [Related]
7. Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars.
Sükösd Z; Knudsen B; Vaerum M; Kjems J; Andersen ES
BMC Bioinformatics; 2011 Apr; 12():103. PubMed ID: 21501497
[TBL] [Abstract][Full Text] [Related]
8. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
Bioinformatics; 2009 Dec; 25(24):3236-43. PubMed ID: 19808876
[TBL] [Abstract][Full Text] [Related]
9. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
Ruan J; Stormo GD; Zhang W
Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
[TBL] [Abstract][Full Text] [Related]
10. Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns.
Meyer F; Kurtz S; Beckstette M
BMC Bioinformatics; 2013 Jul; 14():226. PubMed ID: 23865810
[TBL] [Abstract][Full Text] [Related]
11. A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.
Eddy SR
BMC Bioinformatics; 2002 Jul; 3():18. PubMed ID: 12095421
[TBL] [Abstract][Full Text] [Related]
12. A max-margin model for efficient simultaneous alignment and folding of RNA sequences.
Do CB; Foo CS; Batzoglou S
Bioinformatics; 2008 Jul; 24(13):i68-76. PubMed ID: 18586747
[TBL] [Abstract][Full Text] [Related]
13. R3D Align: global pairwise alignment of RNA 3D structures using local superpositions.
Rahrig RR; Leontis NB; Zirbel CL
Bioinformatics; 2010 Nov; 26(21):2689-97. PubMed ID: 20929913
[TBL] [Abstract][Full Text] [Related]
14. Efficient RNA pairwise structure comparison by SETTER method.
Hoksza D; Svozil D
Bioinformatics; 2012 Jul; 28(14):1858-64. PubMed ID: 22611129
[TBL] [Abstract][Full Text] [Related]
15. Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences.
Xu Z; Mathews DH
Bioinformatics; 2011 Mar; 27(5):626-32. PubMed ID: 21193521
[TBL] [Abstract][Full Text] [Related]
16. RNA-Pareto: interactive analysis of Pareto-optimal RNA sequence-structure alignments.
Schnattinger T; Schöning U; Marchfelder A; Kestler HA
Bioinformatics; 2013 Dec; 29(23):3102-4. PubMed ID: 24045774
[TBL] [Abstract][Full Text] [Related]
17. On comparing two structured RNA multiple alignments.
Patel V; Wang JT; Setia S; Verma A; Warden CD; Zhang K
J Bioinform Comput Biol; 2010 Dec; 8(6):967-80. PubMed ID: 21121021
[TBL] [Abstract][Full Text] [Related]
18. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Ferrè F; Ponty Y; Lorenz WA; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
[TBL] [Abstract][Full Text] [Related]
19. DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.
Sato K; Kato Y; Akutsu T; Asai K; Sakakibara Y
Bioinformatics; 2012 Dec; 28(24):3218-24. PubMed ID: 23060618
[TBL] [Abstract][Full Text] [Related]
20. taveRNA: a web suite for RNA algorithms and applications.
Aksay C; Salari R; Karakoc E; Alkan C; Sahinalp SC
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W325-9. PubMed ID: 17488837
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]