158 related articles for article (PubMed ID: 24034313)
1. Computational prediction of RNA secondary structure.
Moss WN
Methods Enzymol; 2013; 530():3-65. PubMed ID: 24034313
[TBL] [Abstract][Full Text] [Related]
2. Secondary Structure Prediction of Single Sequences Using RNAstructure.
Xu ZZ; Mathews DH
Methods Mol Biol; 2016; 1490():15-34. PubMed ID: 27665590
[TBL] [Abstract][Full Text] [Related]
3. Secondary structure prediction of interacting RNA molecules.
Andronescu M; Zhang ZC; Condon A
J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
[TBL] [Abstract][Full Text] [Related]
4. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
[TBL] [Abstract][Full Text] [Related]
5. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
Mathews DH
Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
[TBL] [Abstract][Full Text] [Related]
6. Analysis of the RNA backbone: structural analysis of riboswitches by in-line probing and selective 2'-hydroxyl acylation and primer extension.
Wakeman CA; Winkler WC
Methods Mol Biol; 2009; 540():173-91. PubMed ID: 19381560
[TBL] [Abstract][Full Text] [Related]
7. ISFOLD: structure prediction of base pairs in non-helical RNA motifs from isostericity signatures in their sequence alignments.
Mokdad A; Frankel AD
J Biomol Struct Dyn; 2008 Apr; 25(5):467-72. PubMed ID: 18282001
[TBL] [Abstract][Full Text] [Related]
8. Prediction of RNA secondary structure by free energy minimization.
Mathews DH; Turner DH
Curr Opin Struct Biol; 2006 Jun; 16(3):270-8. PubMed ID: 16713706
[TBL] [Abstract][Full Text] [Related]
9. Dynalign: an algorithm for finding the secondary structure common to two RNA sequences.
Mathews DH; Turner DH
J Mol Biol; 2002 Mar; 317(2):191-203. PubMed ID: 11902836
[TBL] [Abstract][Full Text] [Related]
10. Identifying complete RNA structural ensembles including pseudoknots.
Gupta A; Rahman R; Li K; Gribskov M
RNA Biol; 2012 Feb; 9(2):187-99. PubMed ID: 22418849
[TBL] [Abstract][Full Text] [Related]
11. Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution.
Wilkinson KA; Merino EJ; Weeks KM
Nat Protoc; 2006; 1(3):1610-6. PubMed ID: 17406453
[TBL] [Abstract][Full Text] [Related]
12. Dynalign II: common secondary structure prediction for RNA homologs with domain insertions.
Fu Y; Sharma G; Mathews DH
Nucleic Acids Res; 2014 Dec; 42(22):13939-48. PubMed ID: 25416799
[TBL] [Abstract][Full Text] [Related]
13. Bridging the gap in RNA structure prediction.
Shapiro BA; Yingling YG; Kasprzak W; Bindewald E
Curr Opin Struct Biol; 2007 Apr; 17(2):157-65. PubMed ID: 17383172
[TBL] [Abstract][Full Text] [Related]
14. [Predicting RNA secondary structures including pseudoknots by covariance with stacking and minimum free energy].
Yang J; Luo Z; Fang X; Wang J; Tang K
Sheng Wu Gong Cheng Xue Bao; 2008 Apr; 24(4):659-64. PubMed ID: 18616179
[TBL] [Abstract][Full Text] [Related]
15. Automated prediction of three-way junction topological families in RNA secondary structures.
Lamiable A; Barth D; Denise A; Quessette F; Vial S; Westhof E
Comput Biol Chem; 2012 Apr; 37():1-5. PubMed ID: 22326420
[TBL] [Abstract][Full Text] [Related]
16. Predicting RNA structure: advances and limitations.
Hofacker IL; Lorenz R
Methods Mol Biol; 2014; 1086():1-19. PubMed ID: 24136595
[TBL] [Abstract][Full Text] [Related]
17. Prediction of Secondary Structures Conserved in Multiple RNA Sequences.
Xu ZZ; Mathews DH
Methods Mol Biol; 2016; 1490():35-50. PubMed ID: 27665591
[TBL] [Abstract][Full Text] [Related]
18. CONTRAfold: RNA secondary structure prediction without physics-based models.
Do CB; Woods DA; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
[TBL] [Abstract][Full Text] [Related]
19. INFO-RNA--a fast approach to inverse RNA folding.
Busch A; Backofen R
Bioinformatics; 2006 Aug; 22(15):1823-31. PubMed ID: 16709587
[TBL] [Abstract][Full Text] [Related]
20. RNAbor: a web server for RNA structural neighbors.
Freyhult E; Moulton V; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W305-9. PubMed ID: 17526527
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
