189 related articles for article (PubMed ID: 24058534)
41. Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias.
McElroy K; Zagordi O; Bull R; Luciani F; Beerenwinkel N
BMC Genomics; 2013 Jul; 14():501. PubMed ID: 23879730
[TBL] [Abstract][Full Text] [Related]
42. Full-Length Open Reading Frame Amplification of Hepatitis C Virus.
Fahnøe U; Bukh J
Methods Mol Biol; 2019; 1911():85-91. PubMed ID: 30593619
[TBL] [Abstract][Full Text] [Related]
43. Combined antiretroviral therapy and immune pressure lead to in vivo HIV-1 recombination with ancestral viral genomes.
Buzón MJ; Wrin T; Codoñer FM; Dalmau J; Phung P; Bonjoch A; Coakley E; Clotet B; Martinez-Picado J
J Acquir Immune Defic Syndr; 2011 Jun; 57(2):109-17. PubMed ID: 21372727
[TBL] [Abstract][Full Text] [Related]
44. Evaluation of Automatic Analysis of Ultradeep Pyrosequencing Raw Data to Determine Percentages of HIV Resistance Mutations in Patients Followed-Up in Hospital.
Bellecave P; Recordon-Pinson P; Fleury H
AIDS Res Hum Retroviruses; 2016 Jan; 32(1):85-92. PubMed ID: 26529549
[TBL] [Abstract][Full Text] [Related]
45. Molecular and geographic characterization of hiv-1 bf recombinant viruses.
Souza JSM; Silva Júnior JJ; Brites C; Monteiro-Cunha JP
Virus Res; 2019 Sep; 270():197650. PubMed ID: 31279829
[TBL] [Abstract][Full Text] [Related]
46. Next generation sequencing improves detection of drug resistance mutations in infants after PMTCT failure.
Fisher RG; Smith DM; Murrell B; Slabbert R; Kirby BM; Edson C; Cotton MF; Haubrich RH; Kosakovsky Pond SL; Van Zyl GU
J Clin Virol; 2015 Jan; 62():48-53. PubMed ID: 25542470
[TBL] [Abstract][Full Text] [Related]
47. In vivo characteristics of human immunodeficiency virus type 1 intersubtype recombination: determination of hot spots and correlation with sequence similarity.
Magiorkinis G; Paraskevis D; Vandamme AM; Magiorkinis E; Sypsa V; Hatzakis A
J Gen Virol; 2003 Oct; 84(Pt 10):2715-2722. PubMed ID: 13679605
[TBL] [Abstract][Full Text] [Related]
48. An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing.
Simen BB; Braverman MS; Abbate I; Aerssens J; Bidet Y; Bouchez O; Gabriel C; Izopet J; Kessler HH; Stelzl E; Di Giallonardo F; Schlapbach R; Radonic A; Paredes R; Recordon-Pinson P; Sakwa J; St John EP; Schmitz-Agheguian GG; Metzner KJ; Däumer MP;
J Virol Methods; 2014 Aug; 204():31-7. PubMed ID: 24731928
[TBL] [Abstract][Full Text] [Related]
49. Recent advances in inferring viral diversity from high-throughput sequencing data.
Posada-Cespedes S; Seifert D; Beerenwinkel N
Virus Res; 2017 Jul; 239():17-32. PubMed ID: 27693290
[TBL] [Abstract][Full Text] [Related]
50. Deep Sequencing of the HIV-1 env Gene Reveals Discrete X4 Lineages and Linkage Disequilibrium between X4 and R5 Viruses in the V1/V2 and V3 Variable Regions.
Zhou S; Bednar MM; Sturdevant CB; Hauser BM; Swanstrom R
J Virol; 2016 Aug; 90(16):7142-58. PubMed ID: 27226378
[TBL] [Abstract][Full Text] [Related]
51. From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing.
Cornelissen M; Gall A; Vink M; Zorgdrager F; Binter Š; Edwards S; Jurriaans S; Bakker M; Ong SH; Gras L; van Sighem A; Bezemer D; de Wolf F; Reiss P; Kellam P; Berkhout B; Fraser C; van der Kuyl AC;
Virus Res; 2017 Jul; 239():10-16. PubMed ID: 27497916
[TBL] [Abstract][Full Text] [Related]
52. Multiplexed next-generation sequencing and de novo assembly to obtain near full-length HIV-1 genome from plasma virus.
Aralaguppe SG; Siddik AB; Manickam A; Ambikan AT; Kumar MM; Fernandes SJ; Amogne W; Bangaruswamy DK; Hanna LE; Sonnerborg A; Neogi U
J Virol Methods; 2016 Oct; 236():98-104. PubMed ID: 27448822
[TBL] [Abstract][Full Text] [Related]
53. Diversity of mosaic structures and common ancestry of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Argentina revealed by analysis of near full-length genome sequences.
Thomson MM; Delgado E; Herrero I; Villahermosa ML; Vázquez-de Parga E; Cuevas MT; Carmona R; Medrano L; Pérez-Álvarez L; Cuevas L; Nájera R
J Gen Virol; 2002 Jan; 83(Pt 1):107-119. PubMed ID: 11752707
[TBL] [Abstract][Full Text] [Related]
54. Polymerase chain reaction (PCR) as a diagnostic tool in HIV infection.
Vandamme AM
Verh K Acad Geneeskd Belg; 1994; 56(3):231-65. PubMed ID: 7519811
[TBL] [Abstract][Full Text] [Related]
55. Error baseline rates of five sample preparation methods used to characterize RNA virus populations.
Kugelman JR; Wiley MR; Nagle ER; Reyes D; Pfeffer BP; Kuhn JH; Sanchez-Lockhart M; Palacios GF
PLoS One; 2017; 12(2):e0171333. PubMed ID: 28182717
[TBL] [Abstract][Full Text] [Related]
56. Next-generation sequencing of dried blood spot specimens: a novel approach to HIV drug-resistance surveillance.
Ji H; Li Y; Graham M; Liang BB; Pilon R; Tyson S; Peters G; Tyler S; Merks H; Bertagnolio S; Soto-Ramirez L; Sandstrom P; Brooks J
Antivir Ther; 2011; 16(6):871-8. PubMed ID: 21900719
[TBL] [Abstract][Full Text] [Related]
57. Prevalence and clinical impacts of HIV-1 intersubtype recombinants in Uganda revealed by near-full-genome population and deep sequencing approaches.
Lee GQ; Bangsberg DR; Mo T; Lachowski C; Brumme CJ; Zhang W; Lima VD; Boum Y; Mwebesa BB; Muzoora C; Andia I; Mbalibulha Y; Kembabazi A; Carroll R; Siedner MJ; Haberer JE; Mocello AR; Kigozi SH; Hunt PW; Martin JN; Harrigan PR
AIDS; 2017 Nov; 31(17):2345-2354. PubMed ID: 28832407
[TBL] [Abstract][Full Text] [Related]
58. ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids.
Sotcheff S; Zhou Y; Yeung J; Sun Y; Johnson JE; Torbett BE; Routh AL
Gigascience; 2023 Mar; 12():. PubMed ID: 36939008
[TBL] [Abstract][Full Text] [Related]
59. Random amplification and pyrosequencing for identification of novel viral genome sequences.
Hang J; Forshey BM; Kochel TJ; Li T; Solórzano VF; Halsey ES; Kuschner RA
J Biomol Tech; 2012 Apr; 23(1):4-10. PubMed ID: 22468136
[TBL] [Abstract][Full Text] [Related]
60. Analysis of HIV-1 BF pr/rt recombinant strains from Rio de Janeiro/Brazil reveals multiple unrelated mosaic structures.
Guimarães ML; Couto-Fernandez JC; Eyer-Silva Wde A; Teixeira SL; Chequer-Fernandez SL; Morgado MG
Infect Genet Evol; 2010 Oct; 10(7):1094-100. PubMed ID: 20621204
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
