399 related articles for article (PubMed ID: 24059539)
1. Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs.
Crappé J; Van Criekinge W; Trooskens G; Hayakawa E; Luyten W; Baggerman G; Menschaert G
BMC Genomics; 2013 Sep; 14():648. PubMed ID: 24059539
[TBL] [Abstract][Full Text] [Related]
2. A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection.
Hanada K; Zhang X; Borevitz JO; Li WH; Shiu SH
Genome Res; 2007 May; 17(5):632-40. PubMed ID: 17395691
[TBL] [Abstract][Full Text] [Related]
3. Extensive identification and analysis of conserved small ORFs in animals.
Mackowiak SD; Zauber H; Bielow C; Thiel D; Kutz K; Calviello L; Mastrobuoni G; Rajewsky N; Kempa S; Selbach M; Obermayer B
Genome Biol; 2015 Sep; 16():179. PubMed ID: 26364619
[TBL] [Abstract][Full Text] [Related]
4. Revisiting sORFs: overcoming challenges to identify and characterize functional microproteins.
Schlesinger D; Elsässer SJ
FEBS J; 2022 Jan; 289(1):53-74. PubMed ID: 33595896
[TBL] [Abstract][Full Text] [Related]
5. sORFs.org: a repository of small ORFs identified by ribosome profiling.
Olexiouk V; Crappé J; Verbruggen S; Verhegen K; Martens L; Menschaert G
Nucleic Acids Res; 2016 Jan; 44(D1):D324-9. PubMed ID: 26527729
[TBL] [Abstract][Full Text] [Related]
6. Using AnABlast for intergenic sORF prediction in the Caenorhabditis elegans genome.
Casimiro-Soriguer CS; Rigual MM; Brokate-Llanos AM; Muñoz MJ; Garzón A; Pérez-Pulido AJ; Jimenez J
Bioinformatics; 2020 Dec; 36(19):4827-4832. PubMed ID: 32614398
[TBL] [Abstract][Full Text] [Related]
7. The Emerging World of Small ORFs.
Hellens RP; Brown CM; Chisnall MAW; Waterhouse PM; Macknight RC
Trends Plant Sci; 2016 Apr; 21(4):317-328. PubMed ID: 26684391
[TBL] [Abstract][Full Text] [Related]
8. Using the sORFs.Org Database.
Olexiouk V; Menschaert G
Curr Protoc Bioinformatics; 2019 Mar; 65(1):e68. PubMed ID: 30485709
[TBL] [Abstract][Full Text] [Related]
9. Micropeptides Identified from Human Genomes.
Yuanyuan J; Xinqiang Y
J Proteome Res; 2022 Apr; 21(4):865-873. PubMed ID: 35253438
[TBL] [Abstract][Full Text] [Related]
10. Computational discovery and annotation of conserved small open reading frames in fungal genomes.
Mat-Sharani S; Firdaus-Raih M
BMC Bioinformatics; 2019 Feb; 19(Suppl 13):551. PubMed ID: 30717662
[TBL] [Abstract][Full Text] [Related]
11. An update on sORFs.org: a repository of small ORFs identified by ribosome profiling.
Olexiouk V; Van Criekinge W; Menschaert G
Nucleic Acids Res; 2018 Jan; 46(D1):D497-D502. PubMed ID: 29140531
[TBL] [Abstract][Full Text] [Related]
12. Mining for missed sORF-encoded peptides.
Yin X; Jing Y; Xu H
Expert Rev Proteomics; 2019 Mar; 16(3):257-266. PubMed ID: 30669886
[TBL] [Abstract][Full Text] [Related]
13. Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation.
Bazin J; Baerenfaller K; Gosai SJ; Gregory BD; Crespi M; Bailey-Serres J
Proc Natl Acad Sci U S A; 2017 Nov; 114(46):E10018-E10027. PubMed ID: 29087317
[TBL] [Abstract][Full Text] [Related]
14. Evolution of new proteins from translated sORFs in long non-coding RNAs.
Ruiz-Orera J; Villanueva-Cañas JL; Albà MM
Exp Cell Res; 2020 Jun; 391(1):111940. PubMed ID: 32156600
[TBL] [Abstract][Full Text] [Related]
15. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs.
Li H; Hu C; Bai L; Li H; Li M; Zhao X; Czajkowsky DM; Shao Z
DNA Res; 2016 Dec; 23(6):571-580. PubMed ID: 27559081
[TBL] [Abstract][Full Text] [Related]
16. Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.
Yang X; Tschaplinski TJ; Hurst GB; Jawdy S; Abraham PE; Lankford PK; Adams RM; Shah MB; Hettich RL; Lindquist E; Kalluri UC; Gunter LE; Pennacchio C; Tuskan GA
Genome Res; 2011 Apr; 21(4):634-41. PubMed ID: 21367939
[TBL] [Abstract][Full Text] [Related]
17. Discovery of Unannotated Small Open Reading Frames in Streptococcus pneumoniae D39 Involved in Quorum Sensing and Virulence Using Ribosome Profiling.
Laczkovich I; Mangano K; Shao X; Hockenberry AJ; Gao Y; Mankin A; Vázquez-Laslop N; Federle MJ
mBio; 2022 Aug; 13(4):e0124722. PubMed ID: 35852327
[TBL] [Abstract][Full Text] [Related]
18. Small Open Reading Frame-Encoded Micro-Peptides: An Emerging Protein World.
Dong X; Zhang K; Xun C; Chu T; Liang S; Zeng Y; Liu Z
Int J Mol Sci; 2023 Jun; 24(13):. PubMed ID: 37445739
[TBL] [Abstract][Full Text] [Related]
19. A Support Vector Machine based method to distinguish long non-coding RNAs from protein coding transcripts.
Schneider HW; Raiol T; Brigido MM; Walter MEMT; Stadler PF
BMC Genomics; 2017 Oct; 18(1):804. PubMed ID: 29047334
[TBL] [Abstract][Full Text] [Related]
20. [Progress on sORF-encoded micropeptides].
Chen XY; Li MW; Wang Y; Chen Q; Xu HM
Yi Chuan; 2021 Aug; 43(8):737-746. PubMed ID: 34413014
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]