BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

245 related articles for article (PubMed ID: 24060135)

  • 21. Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.
    Peabody MA; Van Rossum T; Lo R; Brinkman FS
    BMC Bioinformatics; 2015 Nov; 16():363. PubMed ID: 26537885
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Microbial community analysis using MEGAN.
    Huson DH; Weber N
    Methods Enzymol; 2013; 531():465-85. PubMed ID: 24060133
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Microbial metagenomics: beyond the genome.
    Gilbert JA; Dupont CL
    Ann Rev Mar Sci; 2011; 3():347-71. PubMed ID: 21329209
    [TBL] [Abstract][Full Text] [Related]  

  • 24. ReprDB and panDB: minimalist databases with maximal microbial representation.
    Zhou W; Gay N; Oh J
    Microbiome; 2018 Jan; 6(1):15. PubMed ID: 29347966
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Assessment of metagenomic assembly using simulated next generation sequencing data.
    Mende DR; Waller AS; Sunagawa S; Järvelin AI; Chan MM; Arumugam M; Raes J; Bork P
    PLoS One; 2012; 7(2):e31386. PubMed ID: 22384016
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity.
    Rodriguez-R LM; Gunturu S; Tiedje JM; Cole JR; Konstantinidis KT
    mSystems; 2018; 3(3):. PubMed ID: 29657970
    [TBL] [Abstract][Full Text] [Related]  

  • 27. An Agile Functional Analysis of Metagenomic Data Using SUPER-FOCUS.
    Silva GGZ; Lopes FAC; Edwards RA
    Methods Mol Biol; 2017; 1611():35-44. PubMed ID: 28451970
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Metagenomics: read length matters.
    Wommack KE; Bhavsar J; Ravel J
    Appl Environ Microbiol; 2008 Mar; 74(5):1453-63. PubMed ID: 18192407
    [TBL] [Abstract][Full Text] [Related]  

  • 29. MICCA: a complete and accurate software for taxonomic profiling of metagenomic data.
    Albanese D; Fontana P; De Filippo C; Cavalieri D; Donati C
    Sci Rep; 2015 May; 5():9743. PubMed ID: 25988396
    [TBL] [Abstract][Full Text] [Related]  

  • 30. TWARIT: an extremely rapid and efficient approach for phylogenetic classification of metagenomic sequences.
    Reddy RM; Mohammed MH; Mande SS
    Gene; 2012 Sep; 505(2):259-65. PubMed ID: 22710135
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Computational challenges of sequence classification in microbiomic data.
    Ribeca P; Valiente G
    Brief Bioinform; 2011 Nov; 12(6):614-25. PubMed ID: 21504986
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.
    Bengtsson J; Eriksson KM; Hartmann M; Wang Z; Shenoy BD; Grelet GA; Abarenkov K; Petri A; Rosenblad MA; Nilsson RH
    Antonie Van Leeuwenhoek; 2011 Oct; 100(3):471-5. PubMed ID: 21674231
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Metagenomics: Probing pollutant fate in natural and engineered ecosystems.
    Bouhajja E; Agathos SN; George IF
    Biotechnol Adv; 2016 Dec; 34(8):1413-1426. PubMed ID: 27825829
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome.
    Uritskiy G; DiRuggiero J
    Genes (Basel); 2019 Mar; 10(3):. PubMed ID: 30875864
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE.
    Miller CS
    Methods Enzymol; 2013; 531():333-52. PubMed ID: 24060129
    [TBL] [Abstract][Full Text] [Related]  

  • 36. BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS.
    Fosso B; Santamaria M; Marzano M; Alonso-Alemany D; Valiente G; Donvito G; Monaco A; Notarangelo P; Pesole G
    BMC Bioinformatics; 2015 Jul; 16():203. PubMed ID: 26130132
    [TBL] [Abstract][Full Text] [Related]  

  • 37. WebMGA: a customizable web server for fast metagenomic sequence analysis.
    Wu S; Zhu Z; Fu L; Niu B; Li W
    BMC Genomics; 2011 Sep; 12():444. PubMed ID: 21899761
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Disentangling associated genomes.
    Sloan DB; Bennett GM; Engel P; Williams D; Ochman H
    Methods Enzymol; 2013; 531():445-64. PubMed ID: 24060132
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Computational workflow for the fine-grained analysis of metagenomic samples.
    Pérez-Wohlfeil E; Arjona-Medina JA; Torreno O; Ulzurrun E; Trelles O
    BMC Genomics; 2016 Oct; 17(Suppl 8):802. PubMed ID: 27801291
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Inferring Species Compositions of Complex Fungal Communities from Long- and Short-Read Sequence Data.
    Hu Y; Irinyi L; Hoang MTV; Eenjes T; Graetz A; Stone EA; Meyer W; Schwessinger B; Rathjen JP
    mBio; 2022 Apr; 13(2):e0244421. PubMed ID: 35404122
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 13.