245 related articles for article (PubMed ID: 24060135)
21. Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.
Peabody MA; Van Rossum T; Lo R; Brinkman FS
BMC Bioinformatics; 2015 Nov; 16():363. PubMed ID: 26537885
[TBL] [Abstract][Full Text] [Related]
22. Microbial community analysis using MEGAN.
Huson DH; Weber N
Methods Enzymol; 2013; 531():465-85. PubMed ID: 24060133
[TBL] [Abstract][Full Text] [Related]
23. Microbial metagenomics: beyond the genome.
Gilbert JA; Dupont CL
Ann Rev Mar Sci; 2011; 3():347-71. PubMed ID: 21329209
[TBL] [Abstract][Full Text] [Related]
24. ReprDB and panDB: minimalist databases with maximal microbial representation.
Zhou W; Gay N; Oh J
Microbiome; 2018 Jan; 6(1):15. PubMed ID: 29347966
[TBL] [Abstract][Full Text] [Related]
25. Assessment of metagenomic assembly using simulated next generation sequencing data.
Mende DR; Waller AS; Sunagawa S; Järvelin AI; Chan MM; Arumugam M; Raes J; Bork P
PLoS One; 2012; 7(2):e31386. PubMed ID: 22384016
[TBL] [Abstract][Full Text] [Related]
26. Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity.
Rodriguez-R LM; Gunturu S; Tiedje JM; Cole JR; Konstantinidis KT
mSystems; 2018; 3(3):. PubMed ID: 29657970
[TBL] [Abstract][Full Text] [Related]
27. An Agile Functional Analysis of Metagenomic Data Using SUPER-FOCUS.
Silva GGZ; Lopes FAC; Edwards RA
Methods Mol Biol; 2017; 1611():35-44. PubMed ID: 28451970
[TBL] [Abstract][Full Text] [Related]
28. Metagenomics: read length matters.
Wommack KE; Bhavsar J; Ravel J
Appl Environ Microbiol; 2008 Mar; 74(5):1453-63. PubMed ID: 18192407
[TBL] [Abstract][Full Text] [Related]
29. MICCA: a complete and accurate software for taxonomic profiling of metagenomic data.
Albanese D; Fontana P; De Filippo C; Cavalieri D; Donati C
Sci Rep; 2015 May; 5():9743. PubMed ID: 25988396
[TBL] [Abstract][Full Text] [Related]
30. TWARIT: an extremely rapid and efficient approach for phylogenetic classification of metagenomic sequences.
Reddy RM; Mohammed MH; Mande SS
Gene; 2012 Sep; 505(2):259-65. PubMed ID: 22710135
[TBL] [Abstract][Full Text] [Related]
31. Computational challenges of sequence classification in microbiomic data.
Ribeca P; Valiente G
Brief Bioinform; 2011 Nov; 12(6):614-25. PubMed ID: 21504986
[TBL] [Abstract][Full Text] [Related]
32. Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.
Bengtsson J; Eriksson KM; Hartmann M; Wang Z; Shenoy BD; Grelet GA; Abarenkov K; Petri A; Rosenblad MA; Nilsson RH
Antonie Van Leeuwenhoek; 2011 Oct; 100(3):471-5. PubMed ID: 21674231
[TBL] [Abstract][Full Text] [Related]
33. Metagenomics: Probing pollutant fate in natural and engineered ecosystems.
Bouhajja E; Agathos SN; George IF
Biotechnol Adv; 2016 Dec; 34(8):1413-1426. PubMed ID: 27825829
[TBL] [Abstract][Full Text] [Related]
34. Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome.
Uritskiy G; DiRuggiero J
Genes (Basel); 2019 Mar; 10(3):. PubMed ID: 30875864
[TBL] [Abstract][Full Text] [Related]
35. Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE.
Miller CS
Methods Enzymol; 2013; 531():333-52. PubMed ID: 24060129
[TBL] [Abstract][Full Text] [Related]
36. BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS.
Fosso B; Santamaria M; Marzano M; Alonso-Alemany D; Valiente G; Donvito G; Monaco A; Notarangelo P; Pesole G
BMC Bioinformatics; 2015 Jul; 16():203. PubMed ID: 26130132
[TBL] [Abstract][Full Text] [Related]
37. WebMGA: a customizable web server for fast metagenomic sequence analysis.
Wu S; Zhu Z; Fu L; Niu B; Li W
BMC Genomics; 2011 Sep; 12():444. PubMed ID: 21899761
[TBL] [Abstract][Full Text] [Related]
38. Disentangling associated genomes.
Sloan DB; Bennett GM; Engel P; Williams D; Ochman H
Methods Enzymol; 2013; 531():445-64. PubMed ID: 24060132
[TBL] [Abstract][Full Text] [Related]
39. Computational workflow for the fine-grained analysis of metagenomic samples.
Pérez-Wohlfeil E; Arjona-Medina JA; Torreno O; Ulzurrun E; Trelles O
BMC Genomics; 2016 Oct; 17(Suppl 8):802. PubMed ID: 27801291
[TBL] [Abstract][Full Text] [Related]
40. Inferring Species Compositions of Complex Fungal Communities from Long- and Short-Read Sequence Data.
Hu Y; Irinyi L; Hoang MTV; Eenjes T; Graetz A; Stone EA; Meyer W; Schwessinger B; Rathjen JP
mBio; 2022 Apr; 13(2):e0244421. PubMed ID: 35404122
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]