133 related articles for article (PubMed ID: 24076986)
1. Building an ENCODE-style data compendium on a shoestring.
Ruau D; Ng FS; Wilson NK; Hannah R; Diamanti E; Lombard P; Woodhouse S; Göttgens B
Nat Methods; 2013 Oct; 10(10):926. PubMed ID: 24076986
[No Abstract] [Full Text] [Related]
2. ENCODE whole-genome data in the UCSC Genome Browser: update 2012.
Rosenbloom KR; Dreszer TR; Long JC; Malladi VS; Sloan CA; Raney BJ; Cline MS; Karolchik D; Barber GP; Clawson H; Diekhans M; Fujita PA; Goldman M; Gravell RC; Harte RA; Hinrichs AS; Kirkup VM; Kuhn RM; Learned K; Maddren M; Meyer LR; Pohl A; Rhead B; Wong MC; Zweig AS; Haussler D; Kent WJ
Nucleic Acids Res; 2012 Jan; 40(Database issue):D912-7. PubMed ID: 22075998
[TBL] [Abstract][Full Text] [Related]
3. An encyclopedia of mouse DNA elements (Mouse ENCODE).
; Stamatoyannopoulos JA; Snyder M; Hardison R; Ren B; Gingeras T; Gilbert DM; Groudine M; Bender M; Kaul R; Canfield T; Giste E; Johnson A; Zhang M; Balasundaram G; Byron R; Roach V; Sabo PJ; Sandstrom R; Stehling AS; Thurman RE; Weissman SM; Cayting P; Hariharan M; Lian J; Cheng Y; Landt SG; Ma Z; Wold BJ; Dekker J; Crawford GE; Keller CA; Wu W; Morrissey C; Kumar SA; Mishra T; Jain D; Byrska-Bishop M; Blankenberg D; Lajoie BR; Jain G; Sanyal A; Chen KB; Denas O; Taylor J; Blobel GA; Weiss MJ; Pimkin M; Deng W; Marinov GK; Williams BA; Fisher-Aylor KI; Desalvo G; Kiralusha A; Trout D; Amrhein H; Mortazavi A; Edsall L; McCleary D; Kuan S; Shen Y; Yue F; Ye Z; Davis CA; Zaleski C; Jha S; Xue C; Dobin A; Lin W; Fastuca M; Wang H; Guigo R; Djebali S; Lagarde J; Ryba T; Sasaki T; Malladi VS; Cline MS; Kirkup VM; Learned K; Rosenbloom KR; Kent WJ; Feingold EA; Good PJ; Pazin M; Lowdon RF; Adams LB
Genome Biol; 2012 Aug; 13(8):418. PubMed ID: 22889292
[TBL] [Abstract][Full Text] [Related]
4. Generating Publication-Ready Prokaryotic Genome Annotations with DFAST.
Tanizawa Y; Fujisawa T; Arita M; Nakamura Y
Methods Mol Biol; 2019; 1962():215-226. PubMed ID: 31020563
[TBL] [Abstract][Full Text] [Related]
5. EMBLmyGFF3: a converter facilitating genome annotation submission to European Nucleotide Archive.
Norling M; Jareborg N; Dainat J
BMC Res Notes; 2018 Aug; 11(1):584. PubMed ID: 30103816
[TBL] [Abstract][Full Text] [Related]
6. SNPedia: a wiki supporting personal genome annotation, interpretation and analysis.
Cariaso M; Lennon G
Nucleic Acids Res; 2012 Jan; 40(Database issue):D1308-12. PubMed ID: 22140107
[TBL] [Abstract][Full Text] [Related]
7. The Ensembl gene annotation system.
Aken BL; Ayling S; Barrell D; Clarke L; Curwen V; Fairley S; Fernandez Banet J; Billis K; García Girón C; Hourlier T; Howe K; Kähäri A; Kokocinski F; Martin FJ; Murphy DN; Nag R; Ruffier M; Schuster M; Tang YA; Vogel JH; White S; Zadissa A; Flicek P; Searle SM
Database (Oxford); 2016; 2016():. PubMed ID: 27337980
[TBL] [Abstract][Full Text] [Related]
8. The Ensembl Variant Effect Predictor.
McLaren W; Gil L; Hunt SE; Riat HS; Ritchie GR; Thormann A; Flicek P; Cunningham F
Genome Biol; 2016 Jun; 17(1):122. PubMed ID: 27268795
[TBL] [Abstract][Full Text] [Related]
9. ENCODE whole-genome data in the UCSC Genome Browser.
Rosenbloom KR; Dreszer TR; Pheasant M; Barber GP; Meyer LR; Pohl A; Raney BJ; Wang T; Hinrichs AS; Zweig AS; Fujita PA; Learned K; Rhead B; Smith KE; Kuhn RM; Karolchik D; Haussler D; Kent WJ
Nucleic Acids Res; 2010 Jan; 38(Database issue):D620-5. PubMed ID: 19920125
[TBL] [Abstract][Full Text] [Related]
10. The UCSC Genome Browser database: 2015 update.
Rosenbloom KR; Armstrong J; Barber GP; Casper J; Clawson H; Diekhans M; Dreszer TR; Fujita PA; Guruvadoo L; Haeussler M; Harte RA; Heitner S; Hickey G; Hinrichs AS; Hubley R; Karolchik D; Learned K; Lee BT; Li CH; Miga KH; Nguyen N; Paten B; Raney BJ; Smit AF; Speir ML; Zweig AS; Haussler D; Kuhn RM; Kent WJ
Nucleic Acids Res; 2015 Jan; 43(Database issue):D670-81. PubMed ID: 25428374
[TBL] [Abstract][Full Text] [Related]
11. The vertebrate genome annotation (Vega) database.
Wilming LG; Gilbert JG; Howe K; Trevanion S; Hubbard T; Harrow JL
Nucleic Acids Res; 2008 Jan; 36(Database issue):D753-60. PubMed ID: 18003653
[TBL] [Abstract][Full Text] [Related]
12. CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.
Liu C; Shi L; Zhu Y; Chen H; Zhang J; Lin X; Guan X
BMC Genomics; 2012 Dec; 13():715. PubMed ID: 23256920
[TBL] [Abstract][Full Text] [Related]
13. Exploring bacterial insertion sequences with ISfinder: objectives, uses, and future developments.
Siguier P; Varani A; Perochon J; Chandler M
Methods Mol Biol; 2012; 859():91-103. PubMed ID: 22367867
[TBL] [Abstract][Full Text] [Related]
14. DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.
Tanizawa Y; Fujisawa T; Nakamura Y
Bioinformatics; 2018 Mar; 34(6):1037-1039. PubMed ID: 29106469
[TBL] [Abstract][Full Text] [Related]
15. miRBase Tracker: keeping track of microRNA annotation changes.
Van Peer G; Lefever S; Anckaert J; Beckers A; Rihani A; Van Goethem A; Volders PJ; Zeka F; Ongenaert M; Mestdagh P; Vandesompele J
Database (Oxford); 2014; 2014():. PubMed ID: 25157074
[TBL] [Abstract][Full Text] [Related]
16. The mouse genome database: genotypes, phenotypes, and models of human disease.
Bult CJ; Eppig JT; Blake JA; Kadin JA; Richardson JE;
Nucleic Acids Res; 2013 Jan; 41(Database issue):D885-91. PubMed ID: 23175610
[TBL] [Abstract][Full Text] [Related]
17. NCBI viral genomes resource.
Brister JR; Ako-Adjei D; Bao Y; Blinkova O
Nucleic Acids Res; 2015 Jan; 43(Database issue):D571-7. PubMed ID: 25428358
[TBL] [Abstract][Full Text] [Related]
18. GONUTS: the Gene Ontology Normal Usage Tracking System.
Renfro DP; McIntosh BK; Venkatraman A; Siegele DA; Hu JC
Nucleic Acids Res; 2012 Jan; 40(Database issue):D1262-9. PubMed ID: 22110029
[TBL] [Abstract][Full Text] [Related]
19. CPGAVAS2, an integrated plastome sequence annotator and analyzer.
Shi L; Chen H; Jiang M; Wang L; Wu X; Huang L; Liu C
Nucleic Acids Res; 2019 Jul; 47(W1):W65-W73. PubMed ID: 31066451
[TBL] [Abstract][Full Text] [Related]
20. The European Nucleotide Archive in 2021.
Cummins C; Ahamed A; Aslam R; Burgin J; Devraj R; Edbali O; Gupta D; Harrison PW; Haseeb M; Holt S; Ibrahim T; Ivanov E; Jayathilaka S; Kadhirvelu V; Kay S; Kumar M; Lathi A; Leinonen R; Madeira F; Madhusoodanan N; Mansurova M; O'Cathail C; Pearce M; Pesant S; Rahman N; Rajan J; Rinck G; Selvakumar S; Sokolov A; Suman S; Thorne R; Totoo P; Vijayaraja S; Waheed Z; Zyoud A; Lopez R; Burdett T; Cochrane G
Nucleic Acids Res; 2022 Jan; 50(D1):D106-D110. PubMed ID: 34850158
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]