BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 24078712)

  • 1. BooleSim: an interactive Boolean network simulator.
    Bock M; Scharp T; Talnikar C; Klipp E
    Bioinformatics; 2014 Jan; 30(1):131-2. PubMed ID: 24078712
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Biographer: web-based editing and rendering of SBGN compliant biochemical networks.
    Krause F; Schulz M; Ripkens B; Flöttmann M; Krantz M; Klipp E; Handorf T
    Bioinformatics; 2013 Jun; 29(11):1467-8. PubMed ID: 23574737
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PyBoolNet: a python package for the generation, analysis and visualization of boolean networks.
    Klarner H; Streck A; Siebert H
    Bioinformatics; 2017 Mar; 33(5):770-772. PubMed ID: 27797783
    [TBL] [Abstract][Full Text] [Related]  

  • 4. OCSANA+: optimal control and simulation of signaling networks from network analysis.
    Marazzi L; Gainer-Dewar A; Vera-Licona P
    Bioinformatics; 2020 Dec; 36(19):4960-4962. PubMed ID: 32879935
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Interactive network visualization in Jupyter notebooks: visJS2jupyter.
    Rosenthal SB; Len J; Webster M; Gary A; Birmingham A; Fisch KM
    Bioinformatics; 2018 Jan; 34(1):126-128. PubMed ID: 28968701
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A neuro-evolution approach to infer a Boolean network from time-series gene expressions.
    Barman S; Kwon YK
    Bioinformatics; 2020 Dec; 36(Suppl_2):i762-i769. PubMed ID: 33381823
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ViSiBooL-visualization and simulation of Boolean networks with temporal constraints.
    Schwab J; Burkovski A; Siegle L; Müssel C; Kestler HA
    Bioinformatics; 2017 Feb; 33(4):601-604. PubMed ID: 27797768
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Web-based network analysis and visualization using CellMaps.
    Salavert F; García-Alonso L; Sánchez R; Alonso R; Bleda M; Medina I; Dopazo J
    Bioinformatics; 2016 Oct; 32(19):3041-3. PubMed ID: 27296979
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Phylesystem: a git-based data store for community-curated phylogenetic estimates.
    McTavish EJ; Hinchliff CE; Allman JF; Brown JW; Cranston KA; Holder MT; Rees JA; Smith SA
    Bioinformatics; 2015 Sep; 31(17):2794-800. PubMed ID: 25940563
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PathRings: a web-based tool for exploration of ortholog and expression data in biological pathways.
    Zhu Y; Sun L; Garbarino A; Schmidt C; Fang J; Chen J
    BMC Bioinformatics; 2015 May; 16(1):165. PubMed ID: 25982732
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SensA: web-based sensitivity analysis of SBML models.
    Floettmann M; Uhlendorf J; Scharp T; Klipp E; Spiesser TW
    Bioinformatics; 2014 Oct; 30(19):2830-1. PubMed ID: 24903418
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SteadyCellPhenotype: a web-based tool for the modeling of biological networks with ternary logic.
    Knapp AC; Sordo Vieira L; Laubenbacher R; Chifman J
    Bioinformatics; 2022 Apr; 38(8):2369-2370. PubMed ID: 35179549
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Gobe: an interactive, web-based tool for comparative genomic visualization.
    Pedersen BS; Tang H; Freeling M
    Bioinformatics; 2011 Apr; 27(7):1015-6. PubMed ID: 21296748
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.
    Dorier J; Crespo I; Niknejad A; Liechti R; Ebeling M; Xenarios I
    BMC Bioinformatics; 2016 Oct; 17(1):410. PubMed ID: 27716031
    [TBL] [Abstract][Full Text] [Related]  

  • 15. IcyTree: rapid browser-based visualization for phylogenetic trees and networks.
    Vaughan TG
    Bioinformatics; 2017 Aug; 33(15):2392-2394. PubMed ID: 28407035
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bio Simulators: a web UI for biological simulation.
    Pedersen M; Oury N; Gravill C; Phillips A
    Bioinformatics; 2014 May; 30(10):1491-2. PubMed ID: 24470571
    [TBL] [Abstract][Full Text] [Related]  

  • 17. pystablemotifs: Python library for attractor identification and control in Boolean networks.
    Rozum JC; Deritei D; Park KH; Gómez Tejeda Zañudo J; Albert R
    Bioinformatics; 2022 Feb; 38(5):1465-1466. PubMed ID: 34875008
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ATEN: And/Or tree ensemble for inferring accurate Boolean network topology and dynamics.
    Shi N; Zhu Z; Tang K; Parker D; He S
    Bioinformatics; 2020 Jan; 36(2):578-585. PubMed ID: 31368481
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MetaPath Online: a web server implementation of the network expansion algorithm.
    Handorf T; Ebenhöh O
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W613-8. PubMed ID: 17483511
    [TBL] [Abstract][Full Text] [Related]  

  • 20. pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data.
    Vanderkam D; Aksoy BA; Hodes I; Perrone J; Hammerbacher J
    Bioinformatics; 2016 Aug; 32(15):2378-9. PubMed ID: 27153605
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.