These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

125 related articles for article (PubMed ID: 24079704)

  • 1. Thermal isomerization of the chromoprotein asFP595 and its kindling mutant A143G: QM/MM molecular dynamics simulations.
    Mironov VA; Khrenova MG; Grigorenko BL; Savitsky AP; Nemukhin AV
    J Phys Chem B; 2013 Oct; 117(43):13507-14. PubMed ID: 24079704
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Kindling fluorescent protein from Anemonia sulcata: dark-state structure at 1.38 A resolution.
    Quillin ML; Anstrom DM; Shu X; O'Leary S; Kallio K; Chudakov DM; Remington SJ
    Biochemistry; 2005 Apr; 44(15):5774-87. PubMed ID: 15823036
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Unusual emitting states of the kindling fluorescent protein: appearance of the cationic chromophore in the GFP family.
    Grigorenko BL; Polyakov IV; Savitsky AP; Nemukhin AV
    J Phys Chem B; 2013 Jun; 117(24):7228-34. PubMed ID: 23697758
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Modeling photoabsorption of the asFP595 chromophore.
    Bravaya KB; Bochenkova AV; Granovsky AA; Savitsky AP; Nemukhin AV
    J Phys Chem A; 2008 Sep; 112(37):8804-10. PubMed ID: 18729441
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Role of zwitterions in kindling fluorescent protein photochemistry.
    Mironov VA; Bravaya KB; Nemukhin AV
    J Phys Chem B; 2015 Feb; 119(6):2467-74. PubMed ID: 25365115
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Ground-state structures and vertical excitations for the kindling fluorescent protein asFP595.
    Grigorenko B; Savitsky A; Topol I; Burt S; Nemukhin A
    J Phys Chem B; 2006 Sep; 110(37):18635-40. PubMed ID: 16970493
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Chromophore protonation state controls photoswitching of the fluoroprotein asFP595.
    Schäfer LV; Groenhof G; Boggio-Pasqua M; Robb MA; Grubmüller H
    PLoS Comput Biol; 2008 Mar; 4(3):e1000034. PubMed ID: 18369426
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Trans-cis isomerization is responsible for the red-shifted fluorescence in variants of the red fluorescent protein eqFP611.
    Nienhaus K; Nar H; Heilker R; Wiedenmann J; Nienhaus GU
    J Am Chem Soc; 2008 Sep; 130(38):12578-9. PubMed ID: 18761441
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Synthesis and properties of the chromophore of the asFP595 chromoprotein from Anemonia sulcata.
    Yampolsky IV; Remington SJ; Martynov VI; Potapov VK; Lukyanov S; Lukyanov KA
    Biochemistry; 2005 Apr; 44(15):5788-93. PubMed ID: 15823037
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Isomerization mechanism of the HcRed fluorescent protein chromophore.
    Sun Q; Li Z; Lan Z; Pfisterer C; Doerr M; Fischer S; Smith SC; Thiel W
    Phys Chem Chem Phys; 2012 Aug; 14(32):11413-24. PubMed ID: 22801745
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Low-temperature chromophore isomerization reveals the photoswitching mechanism of the fluorescent protein Padron.
    Faro AR; Carpentier P; Jonasson G; Pompidor G; Arcizet D; Demachy I; Bourgeois D
    J Am Chem Soc; 2011 Oct; 133(41):16362-5. PubMed ID: 21923132
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A structural basis for the pH-dependent increase in fluorescence efficiency of chromoproteins.
    Battad JM; Wilmann PG; Olsen S; Byres E; Smith SC; Dove SG; Turcic KN; Devenish RJ; Rossjohn J; Prescott M
    J Mol Biol; 2007 May; 368(4):998-1010. PubMed ID: 17376484
    [TBL] [Abstract][Full Text] [Related]  

  • 13. QM/MM study of the monomeric red fluorescent protein DsRed.M1.
    Sanchez-Garcia E; Doerr M; Hsiao YW; Thiel W
    J Phys Chem B; 2009 Dec; 113(52):16622-31. PubMed ID: 19994834
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Quantum refinement of protein structures: implementation and application to the red fluorescent protein DsRed.M1.
    Hsiao YW; Sanchez-Garcia E; Doerr M; Thiel W
    J Phys Chem B; 2010 Nov; 114(46):15413-23. PubMed ID: 20977248
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Traditional GFP-type cyclization and unexpected fragmentation site in a purple chromoprotein from Anemonia sulcata, asFP595.
    Zagranichny VE; Rudenko NV; Gorokhovatsky AY; Zakharov MV; Balashova TA; Arseniev AS
    Biochemistry; 2004 Oct; 43(42):13598-603. PubMed ID: 15491166
    [TBL] [Abstract][Full Text] [Related]  

  • 16. How does Pin1 catalyze the cis-trans prolyl peptide bond isomerization? A QM/MM and mean reaction force study.
    Vöhringer-Martinez E; Duarte F; Toro-Labbé A
    J Phys Chem B; 2012 Nov; 116(43):12972-9. PubMed ID: 23030417
    [TBL] [Abstract][Full Text] [Related]  

  • 17. QM/MM studies of structural and energetic properties of the far-red fluorescent protein HcRed.
    Sun Q; Doerr M; Li Z; Smith SC; Thiel W
    Phys Chem Chem Phys; 2010 Mar; 12(10):2450-8. PubMed ID: 20449359
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Photophysics of the red chromophore of HcRed: evidence for cis-trans isomerization and protonation-state changes.
    Mudalige K; Habuchi S; Goodwin PM; Pai RK; De Schryver F; Cotlet M
    J Phys Chem B; 2010 Apr; 114(13):4678-85. PubMed ID: 20230057
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Excited state dynamics of photoswitchable fluorescent protein Padron.
    Fron E; Van der Auweraer M; Hofkens J; Dedecker P
    J Phys Chem B; 2013 Dec; 117(51):16422-7. PubMed ID: 24308373
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Alternative cyclization in GFP-like proteins family. The formation and structure of the chromophore of a purple chromoprotein from Anemonia sulcata.
    Martynov VI; Savitsky AP; Martynova NY; Savitsky PA; Lukyanov KA; Lukyanov SA
    J Biol Chem; 2001 Jun; 276(24):21012-6. PubMed ID: 11259412
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.