These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
248 related articles for article (PubMed ID: 24093595)
1. A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis. Tucker G; Loh PR; Berger B BMC Bioinformatics; 2013 Oct; 14():299. PubMed ID: 24093595 [TBL] [Abstract][Full Text] [Related]
2. Computational detection of protein complexes in AP-MS experiments. Choi H Proteomics; 2012 May; 12(10):1663-8. PubMed ID: 22711593 [TBL] [Abstract][Full Text] [Related]
3. A novel scoring approach for protein co-purification data reveals high interaction specificity. Yu X; Ivanic J; Wallqvist A; Reifman J PLoS Comput Biol; 2009 Sep; 5(9):e1000515. PubMed ID: 19779545 [TBL] [Abstract][Full Text] [Related]
4. Reinforce: An Ensemble Approach for Inferring PPI Network from AP-MS Data. Tian B; Duan Q; Zhao C; Teng B; He Z IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(2):365-376. PubMed ID: 28534782 [TBL] [Abstract][Full Text] [Related]
5. Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments. Nesvizhskii AI Proteomics; 2012 May; 12(10):1639-55. PubMed ID: 22611043 [TBL] [Abstract][Full Text] [Related]
6. A two-step framework for inferring direct protein-protein interaction network from AP-MS data. Tian B; Zhao C; Gu F; He Z BMC Syst Biol; 2017 Sep; 11(Suppl 4):82. PubMed ID: 28950876 [TBL] [Abstract][Full Text] [Related]
7. Identifying binary protein-protein interactions from affinity purification mass spectrometry data. Zhang XF; Ou-Yang L; Hu X; Dai DQ BMC Genomics; 2015 Oct; 16():745. PubMed ID: 26438428 [TBL] [Abstract][Full Text] [Related]
8. ROCS: a reproducibility index and confidence score for interaction proteomics studies. Dazard JE; Saha S; Ewing RM BMC Bioinformatics; 2012 Jun; 13():128. PubMed ID: 22682516 [TBL] [Abstract][Full Text] [Related]
9. Detection of protein complexes from affinity purification/mass spectrometry data. Cai B; Wang H; Zheng H; Wang H BMC Syst Biol; 2012; 6 Suppl 3(Suppl 3):S4. PubMed ID: 23282282 [TBL] [Abstract][Full Text] [Related]
10. Computational framework for analysis of prey-prey associations in interaction proteomics identifies novel human protein-protein interactions and networks. Saha S; Dazard JE; Xu H; Ewing RM J Proteome Res; 2012 Sep; 11(9):4476-87. PubMed ID: 22845868 [TBL] [Abstract][Full Text] [Related]
11. SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments. Choi H; Glatter T; Gstaiger M; Nesvizhskii AI J Proteome Res; 2012 Apr; 11(4):2619-24. PubMed ID: 22352807 [TBL] [Abstract][Full Text] [Related]
13. Pre- and post-processing workflow for affinity purification mass spectrometry data. Fischer M; Zilkenat S; Gerlach RG; Wagner S; Renard BY J Proteome Res; 2014 May; 13(5):2239-49. PubMed ID: 24641689 [TBL] [Abstract][Full Text] [Related]
14. Beyond hairballs: The use of quantitative mass spectrometry data to understand protein-protein interactions. Gingras AC; Raught B FEBS Lett; 2012 Aug; 586(17):2723-31. PubMed ID: 22710165 [TBL] [Abstract][Full Text] [Related]
15. Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. Armean IM; Lilley KS; Trotter MW Mol Cell Proteomics; 2013 Jan; 12(1):1-13. PubMed ID: 23071097 [TBL] [Abstract][Full Text] [Related]
16. Affinity-purification coupled to mass spectrometry: basic principles and strategies. Dunham WH; Mullin M; Gingras AC Proteomics; 2012 May; 12(10):1576-90. PubMed ID: 22611051 [TBL] [Abstract][Full Text] [Related]
17. Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data. Choi H; Kim S; Gingras AC; Nesvizhskii AI Mol Syst Biol; 2010 Jun; 6():385. PubMed ID: 20571534 [TBL] [Abstract][Full Text] [Related]
18. Parallel Exploration of Interaction Space by BioID and Affinity Purification Coupled to Mass Spectrometry. Hesketh GG; Youn JY; Samavarchi-Tehrani P; Raught B; Gingras AC Methods Mol Biol; 2017; 1550():115-136. PubMed ID: 28188527 [TBL] [Abstract][Full Text] [Related]
19. Network inference from AP-MS data: computational challenges and solutions. Teng B; Zhao C; Liu X; He Z Brief Bioinform; 2015 Jul; 16(4):658-74. PubMed ID: 25378435 [TBL] [Abstract][Full Text] [Related]
20. Mapping Protein-Protein Interactions Using Affinity Purification and Mass Spectrometry. Lee CM; Adamchek C; Feke A; Nusinow DA; Gendron JM Methods Mol Biol; 2017; 1610():231-249. PubMed ID: 28439867 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]