These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Computation of mutual information from Hidden Markov Models. Reker D; Katzenbeisser S; Hamacher K Comput Biol Chem; 2010 Dec; 34(5-6):328-33. PubMed ID: 20951093 [TBL] [Abstract][Full Text] [Related]
4. What is a hidden Markov model? Eddy SR Nat Biotechnol; 2004 Oct; 22(10):1315-6. PubMed ID: 15470472 [No Abstract] [Full Text] [Related]
5. Bayesian restoration of a hidden Markov chain with applications to DNA sequencing. Churchill GA; Lazareva B J Comput Biol; 1999; 6(2):261-77. PubMed ID: 10421527 [TBL] [Abstract][Full Text] [Related]
7. StochHMM: a flexible hidden Markov model tool and C++ library. Lott PC; Korf I Bioinformatics; 2014 Jun; 30(11):1625-6. PubMed ID: 24489371 [TBL] [Abstract][Full Text] [Related]
8. A clustering approach for estimating parameters of a profile hidden Markov model. Aghdam R; Pezeshk H; Malekpour SA; Shemehsavar S; Eslahchi C Int J Data Min Bioinform; 2013; 8(1):66-82. PubMed ID: 23865165 [TBL] [Abstract][Full Text] [Related]
9. SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model. Alexandersson M; Cawley S; Pachter L Genome Res; 2003 Mar; 13(3):496-502. PubMed ID: 12618381 [TBL] [Abstract][Full Text] [Related]
10. Bayesian coestimation of phylogeny and sequence alignment. Lunter G; Miklós I; Drummond A; Jensen JL; Hein J BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354 [TBL] [Abstract][Full Text] [Related]
11. HMMoC--a compiler for hidden Markov models. Lunter G Bioinformatics; 2007 Sep; 23(18):2485-7. PubMed ID: 17623703 [TBL] [Abstract][Full Text] [Related]
12. Cache-Oblivious parallel SIMD Viterbi decoding for sequence search in HMMER. Ferreira M; Roma N; Russo LM BMC Bioinformatics; 2014 May; 15():165. PubMed ID: 24884826 [TBL] [Abstract][Full Text] [Related]