These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
181 related articles for article (PubMed ID: 24136600)
1. Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocol. Seetin MG; Kladwang W; Bida JP; Das R Methods Mol Biol; 2014; 1086():95-117. PubMed ID: 24136600 [TBL] [Abstract][Full Text] [Related]
2. Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2. Busan S; Weeks KM RNA; 2018 Feb; 24(2):143-148. PubMed ID: 29114018 [TBL] [Abstract][Full Text] [Related]
3. SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing. Loughrey D; Watters KE; Settle AH; Lucks JB Nucleic Acids Res; 2014 Dec; 42(21):e165. PubMed ID: 25303992 [TBL] [Abstract][Full Text] [Related]
4. Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq). Lucks JB; Mortimer SA; Trapnell C; Luo S; Aviran S; Schroth GP; Pachter L; Doudna JA; Arkin AP Proc Natl Acad Sci U S A; 2011 Jul; 108(27):11063-8. PubMed ID: 21642531 [TBL] [Abstract][Full Text] [Related]
5. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization. Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388 [TBL] [Abstract][Full Text] [Related]
6. Highly efficient ligation of small RNA molecules for microRNA quantitation by high-throughput sequencing. Lee JE; Yi R J Vis Exp; 2014 Nov; (93):e52095. PubMed ID: 25490151 [TBL] [Abstract][Full Text] [Related]
7. SHAPE Profiling to Probe Group II Intron Conformational Dynamics During Splicing. Wiryaman T; Toor N Methods Mol Biol; 2021; 2167():171-182. PubMed ID: 32712920 [TBL] [Abstract][Full Text] [Related]
8. High-Throughput Mapping of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol). Marchand V; Ayadi L; El Hajj A; Blanloeil-Oillo F; Helm M; Motorin Y Methods Mol Biol; 2017; 1562():171-187. PubMed ID: 28349461 [TBL] [Abstract][Full Text] [Related]
9. Mod-seq: high-throughput sequencing for chemical probing of RNA structure. Talkish J; May G; Lin Y; Woolford JL; McManus CJ RNA; 2014 May; 20(5):713-20. PubMed ID: 24664469 [TBL] [Abstract][Full Text] [Related]
10. Small RNA Profiling by Next-Generation Sequencing Using High-Definition Adapters. Payet R; Billmeier M Methods Mol Biol; 2023; 2630():103-115. PubMed ID: 36689179 [TBL] [Abstract][Full Text] [Related]
11. Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq). Watters KE; Lucks JB Methods Mol Biol; 2016; 1490():135-62. PubMed ID: 27665597 [TBL] [Abstract][Full Text] [Related]
12. The evolution of RNA structural probing methods: From gels to next-generation sequencing. Mailler E; Paillart JC; Marquet R; Smyth RP; Vivet-Boudou V Wiley Interdiscip Rev RNA; 2019 Mar; 10(2):e1518. PubMed ID: 30485688 [TBL] [Abstract][Full Text] [Related]
13. Fully automated pipeline for detection of sex linked genes using RNA-Seq data. Michalovova M; Kubat Z; Hobza R; Vyskot B; Kejnovsky E BMC Bioinformatics; 2015 Mar; 16(1):78. PubMed ID: 25884927 [TBL] [Abstract][Full Text] [Related]
15. A Small RNA-Seq Protocol with Less Bias and Improved Capture of 2'-O-Methyl RNAs. van Dijk EL; Thermes C Methods Mol Biol; 2021; 2298():153-167. PubMed ID: 34085244 [TBL] [Abstract][Full Text] [Related]
16. Profiling of RNA Structure at Single-Nucleotide Resolution Using nextPARS. Chorostecki U; Willis JR; Saus E; Gabaldon T Methods Mol Biol; 2021; 2284():51-62. PubMed ID: 33835437 [TBL] [Abstract][Full Text] [Related]
17. Selective amplification and sequencing of cyclic phosphate-containing RNAs by the cP-RNA-seq method. Honda S; Morichika K; Kirino Y Nat Protoc; 2016 Mar; 11(3):476-89. PubMed ID: 26866791 [TBL] [Abstract][Full Text] [Related]