BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

363 related articles for article (PubMed ID: 24146954)

  • 1. Systematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups.
    Wu D; Jospin G; Eisen JA
    PLoS One; 2013; 8(10):e77033. PubMed ID: 24146954
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quantitatively Partitioning Microbial Genomic Traits among Taxonomic Ranks across the Microbial Tree of Life.
    Royalty TM; Steen AD
    mSphere; 2019 Aug; 4(4):. PubMed ID: 31462411
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Telling the whole story in a 10,000-genome world.
    Beiko RG
    Biol Direct; 2011 Jun; 6():34. PubMed ID: 21714939
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2.
    Zhou J; Deng Y; Luo F; He Z; Yang Y
    mBio; 2011; 2(4):. PubMed ID: 21791581
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.
    Wu M; Scott AJ
    Bioinformatics; 2012 Apr; 28(7):1033-4. PubMed ID: 22332237
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
    Wu D; Hugenholtz P; Mavromatis K; Pukall R; Dalin E; Ivanova NN; Kunin V; Goodwin L; Wu M; Tindall BJ; Hooper SD; Pati A; Lykidis A; Spring S; Anderson IJ; D'haeseleer P; Zemla A; Singer M; Lapidus A; Nolan M; Copeland A; Han C; Chen F; Cheng JF; Lucas S; Kerfeld C; Lang E; Gronow S; Chain P; Bruce D; Rubin EM; Kyrpides NC; Klenk HP; Eisen JA
    Nature; 2009 Dec; 462(7276):1056-60. PubMed ID: 20033048
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences.
    Liu B; Gibbons T; Ghodsi M; Treangen T; Pop M
    BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S4. PubMed ID: 21989143
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A New Analysis of Archaea-Bacteria Domain Separation: Variable Phylogenetic Distance and the Tempo of Early Evolution.
    Berkemer SJ; McGlynn SE
    Mol Biol Evol; 2020 Aug; 37(8):2332-2340. PubMed ID: 32316034
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Taxonomic utility of a phylogenetic analysis of phosphoglycerate kinase proteins of Archaea, Bacteria, and Eukaryota: insights by Bayesian analyses.
    Pollack JD; Li Q; Pearl DK
    Mol Phylogenet Evol; 2005 May; 35(2):420-30. PubMed ID: 15804412
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genome trees constructed using five different approaches suggest new major bacterial clades.
    Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
    BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.
    DeAngelis KM; Firestone MK
    Appl Environ Microbiol; 2012 Apr; 78(7):2459-61. PubMed ID: 22286992
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems.
    Roux S; Enault F; Bronner G; Debroas D
    FEMS Microbiol Ecol; 2011 Dec; 78(3):617-28. PubMed ID: 22066608
    [TBL] [Abstract][Full Text] [Related]  

  • 13. En route to a genome-based classification of Archaea and Bacteria?
    Klenk HP; Göker M
    Syst Appl Microbiol; 2010 Jun; 33(4):175-82. PubMed ID: 20409658
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution.
    Bhandari V; Naushad HS; Gupta RS
    Front Cell Infect Microbiol; 2012; 2():98. PubMed ID: 22919687
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups.
    Gupta RS; Bhandari V
    Antonie Van Leeuwenhoek; 2011 Jun; 100(1):1-34. PubMed ID: 21503713
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mapping the tree of life: progress and prospects.
    Pace NR
    Microbiol Mol Biol Rev; 2009 Dec; 73(4):565-76. PubMed ID: 19946133
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes.
    Wu YW
    BMC Genomics; 2018 Jan; 19(Suppl 1):921. PubMed ID: 29363425
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A phylum-level bacterial phylogenetic marker database.
    Wang Z; Wu M
    Mol Biol Evol; 2013 Jun; 30(6):1258-62. PubMed ID: 23519313
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The bacterial species dilemma and the genomic-phylogenetic species concept.
    Staley JT
    Philos Trans R Soc Lond B Biol Sci; 2006 Nov; 361(1475):1899-909. PubMed ID: 17062409
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods.
    Bernard G; Stephens TG; González-Pech RA; Chan CX
    Methods Mol Biol; 2021; 2242():69-76. PubMed ID: 33961218
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.