BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

154 related articles for article (PubMed ID: 24149049)

  • 1. Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets.
    Wang M; Zhao XM; Tan H; Akutsu T; Whisstock JC; Song J
    Bioinformatics; 2014 Jan; 30(1):71-80. PubMed ID: 24149049
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Cascleave: towards more accurate prediction of caspase substrate cleavage sites.
    Song J; Tan H; Shen H; Mahmood K; Boyd SE; Webb GI; Akutsu T; Whisstock JC
    Bioinformatics; 2010 Mar; 26(6):752-60. PubMed ID: 20130033
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features.
    Bao Y; Marini S; Tamura T; Kamada M; Maegawa S; Hosokawa H; Song J; Akutsu T
    Brief Bioinform; 2019 Sep; 20(5):1669-1684. PubMed ID: 29860277
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences.
    Backes C; Kuentzer J; Lenhof HP; Comtesse N; Meese E
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W208-13. PubMed ID: 15980455
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Proteome-wide identification of family member-specific natural substrate repertoire of caspases.
    Ju W; Valencia CA; Pang H; Ke Y; Gao W; Dong B; Liu R
    Proc Natl Acad Sci U S A; 2007 Sep; 104(36):14294-9. PubMed ID: 17728405
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Pripper: prediction of caspase cleavage sites from whole proteomes.
    Piippo M; Lietzén N; Nevalainen OS; Salmi J; Nyman TA
    BMC Bioinformatics; 2010 Jun; 11():320. PubMed ID: 20546630
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CaSPredictor: a new computer-based tool for caspase substrate prediction.
    Garay-Malpartida HM; Occhiucci JM; Alves J; Belizário JE
    Bioinformatics; 2005 Jun; 21 Suppl 1():i169-76. PubMed ID: 15961454
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CASVM: web server for SVM-based prediction of caspase substrates cleavage sites.
    Wee LJ; Tan TW; Ranganathan S
    Bioinformatics; 2007 Dec; 23(23):3241-3. PubMed ID: 17599937
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identification of the BCL2/adenovirus E1B-19K protein-interacting protein 2 (BNIP-2) as a granzyme B target during human natural killer cell-mediated killing.
    Scott GB; Bowles PA; Wilson EB; Meade JL; Low BC; Davison A; Blair GE; Cook GP
    Biochem J; 2010 Nov; 431(3):423-31. PubMed ID: 20704564
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Cleavage of Notch1 by granzyme B disables its transcriptional activity.
    van Tetering G; Bovenschen N; Meeldijk J; van Diest PJ; Vooijs M
    Biochem J; 2011 Jul; 437(2):313-22. PubMed ID: 21548883
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Developing a powerful in silico tool for the discovery of novel caspase-3 substrates: a preliminary screening of the human proteome.
    Ayyash M; Tamimi H; Ashhab Y
    BMC Bioinformatics; 2012 Jan; 13():14. PubMed ID: 22269041
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The three-dimensional structure of human granzyme B compared to caspase-3, key mediators of cell death with cleavage specificity for aspartic acid in P1.
    Rotonda J; Garcia-Calvo M; Bull HG; Geissler WM; McKeever BM; Willoughby CA; Thornberry NA; Becker JW
    Chem Biol; 2001 Apr; 8(4):357-68. PubMed ID: 11325591
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Prediction of protease substrates using sequence and structure features.
    Barkan DT; Hostetter DR; Mahrus S; Pieper U; Wells JA; Craik CS; Sali A
    Bioinformatics; 2010 Jul; 26(14):1714-22. PubMed ID: 20505003
    [TBL] [Abstract][Full Text] [Related]  

  • 14. iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites.
    Song J; Wang Y; Li F; Akutsu T; Rawlings ND; Webb GI; Chou KC
    Brief Bioinform; 2019 Mar; 20(2):638-658. PubMed ID: 29897410
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PROSPER: an integrated feature-based tool for predicting protease substrate cleavage sites.
    Song J; Tan H; Perry AJ; Akutsu T; Webb GI; Whisstock JC; Pike RN
    PLoS One; 2012; 7(11):e50300. PubMed ID: 23209700
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A multi-factor model for caspase degradome prediction.
    Wee LJ; Tong JC; Tan TW; Ranganathan S
    BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S6. PubMed ID: 19958504
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Caspase cleavage sites in the human proteome: CaspDB, a database of predicted substrates.
    Kumar S; van Raam BJ; Salvesen GS; Cieplak P
    PLoS One; 2014; 9(10):e110539. PubMed ID: 25330111
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The substrate specificity profile of human granzyme A.
    Van Damme P; Maurer-Stroh S; Hao H; Colaert N; Timmerman E; Eisenhaber F; Vandekerckhove J; Gevaert K
    Biol Chem; 2010 Aug; 391(8):983-97. PubMed ID: 20536382
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Granzyme B-mediated degradation of T-cell receptor zeta chain.
    Wieckowski E; Wang GQ; Gastman BR; Goldstein LA; Rabinowich H
    Cancer Res; 2002 Sep; 62(17):4884-9. PubMed ID: 12208735
    [TBL] [Abstract][Full Text] [Related]  

  • 20. In silico prediction of the granzyme B degradome.
    Wee LJ; Er EP; Ng LF; Tong JC
    BMC Genomics; 2011 Nov; 12 Suppl 3(Suppl 3):S11. PubMed ID: 22479704
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.