These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 24163200)

  • 1. Modeling, simulation and analysis of methylation profiles from reduced representation bisulfite sequencing experiments.
    Lacey MR; Baribault C; Ehrlich M
    Stat Appl Genet Mol Biol; 2013 Dec; 12(6):723-42. PubMed ID: 24163200
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Systematic assessment of reduced representation bisulfite sequencing to human blood samples: A promising method for large-sample-scale epigenomic studies.
    Wang L; Sun J; Wu H; Liu S; Wang J; Wu B; Huang S; Li N; Wang J; Zhang X
    J Biotechnol; 2012 Jan; 157(1):1-6. PubMed ID: 21763364
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RRBS-analyser: a comprehensive web server for reduced representation bisulfite sequencing data analysis.
    Wang T; Liu Q; Li X; Wang X; Li J; Zhu X; Sun ZS; Wu J
    Hum Mutat; 2013 Dec; 34(12):1606-10. PubMed ID: 24106010
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
    Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
    Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A comprehensive evaluation of computational tools to identify differential methylation regions using RRBS data.
    Liu Y; Han Y; Zhou L; Pan X; Sun X; Liu Y; Liang M; Qin J; Lu Y; Liu P
    Genomics; 2020 Nov; 112(6):4567-4576. PubMed ID: 32712292
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing.
    Wang J; Xia Y; Li L; Gong D; Yao Y; Luo H; Lu H; Yi N; Wu H; Zhang X; Tao Q; Gao F
    BMC Genomics; 2013 Jan; 14():11. PubMed ID: 23324053
    [TBL] [Abstract][Full Text] [Related]  

  • 7. [Reduced representation bisulfite sequencing design for assessing the methylation of human CpG islands in large samples].
    Tanas AS; Kuznetsova EB; Borisova ME; Rudenko VV; Zaletayev DV; Strelnikov VV
    Mol Biol (Mosk); 2015; 49(4):689-99. PubMed ID: 26299869
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Detecting differential DNA methylation from sequencing of bisulfite converted DNA of diverse species.
    Huh I; Wu X; Park T; Yi SV
    Brief Bioinform; 2019 Jan; 20(1):33-46. PubMed ID: 28981571
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus.
    Condon DE; Tran PV; Lien YC; Schug J; Georgieff MK; Simmons RA; Won KJ
    BMC Bioinformatics; 2018 Feb; 19(1):31. PubMed ID: 29402210
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Generating Multiple Base-Resolution DNA Methylomes Using Reduced Representation Bisulfite Sequencing.
    Chatterjee A; Rodger EJ; Stockwell PA; Le Mée G; Morison IM
    Methods Mol Biol; 2017; 1537():279-298. PubMed ID: 27924600
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data.
    Baheti S; Kanwar R; Goelzenleuchter M; Kocher JP; Beutler AS; Sun Z
    BMC Genomics; 2016 Feb; 17():149. PubMed ID: 26922377
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DMRFusion: A differentially methylated region detection tool based on the ranked fusion method.
    Yassi M; Shams Davodly E; Mojtabanezhad Shariatpanahi A; Heidari M; Dayyani M; Heravi-Moussavi A; Moattar MH; Kerachian MA
    Genomics; 2018 Nov; 110(6):366-374. PubMed ID: 29309841
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Identification of functionally methylated regions based on discriminant analysis through integrating methylation and gene expression data.
    Zhang Y; Zhang J
    Mol Biosyst; 2015 Jul; 11(7):1786-93. PubMed ID: 25865601
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Q-RRBS: a quantitative reduced representation bisulfite sequencing method for single-cell methylome analyses.
    Wang K; Li X; Dong S; Liang J; Mao F; Zeng C; Wu H; Wu J; Cai W; Sun ZS
    Epigenetics; 2015; 10(9):775-83. PubMed ID: 26213102
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR.
    Chen Y; Pal B; Visvader JE; Smyth GK
    F1000Res; 2017; 6():2055. PubMed ID: 29333247
    [TBL] [Abstract][Full Text] [Related]  

  • 16. E-value: a superior alternative to P-value and its adjustments in DNA methylation studies.
    Yang Y; Liu H; Liu Y; Zhou L; Zheng X; Yue R; Mattson DL; Kidambi S; Liang M; Liu P; Pan X
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37369639
    [TBL] [Abstract][Full Text] [Related]  

  • 17. metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data.
    Jühling F; Kretzmer H; Bernhart SH; Otto C; Stadler PF; Hoffmann S
    Genome Res; 2016 Feb; 26(2):256-62. PubMed ID: 26631489
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A Flexible, Efficient Binomial Mixed Model for Identifying Differential DNA Methylation in Bisulfite Sequencing Data.
    Lea AJ; Tung J; Zhou X
    PLoS Genet; 2015 Nov; 11(11):e1005650. PubMed ID: 26599596
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.
    Sun Z; Baheti S; Middha S; Kanwar R; Zhang Y; Li X; Beutler AS; Klee E; Asmann YW; Thompson EA; Kocher JP
    Bioinformatics; 2012 Aug; 28(16):2180-1. PubMed ID: 22689387
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Statistical method evaluation for differentially methylated CpGs in base resolution next-generation DNA sequencing data.
    Zhang Y; Baheti S; Sun Z
    Brief Bioinform; 2018 May; 19(3):374-386. PubMed ID: 28040747
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.