101 related articles for article (PubMed ID: 24164447)
1. Unraveling the molecular structure of the catalytic domain of matrix metalloproteinase-2 in complex with a triple-helical peptide by means of molecular dynamics simulations.
Díaz N; Suárez D; Valdés H
Biochemistry; 2013 Nov; 52(47):8556-69. PubMed ID: 24164447
[TBL] [Abstract][Full Text] [Related]
2. Extensive simulations of the full-length matrix metalloproteinase-2 enzyme in a prereactive complex with a collagen triple-helical peptide.
Díaz N; Suárez D
Biochemistry; 2015 Feb; 54(5):1243-58. PubMed ID: 25600631
[TBL] [Abstract][Full Text] [Related]
3. Molecular dynamics simulations of the active matrix metalloproteinase-2: positioning of the N-terminal fragment and binding of a small peptide substrate.
Díaz N; Suárez D
Proteins; 2008 Jul; 72(1):50-61. PubMed ID: 18186480
[TBL] [Abstract][Full Text] [Related]
4. Kinetic analysis of matrix metalloproteinase activity using fluorogenic triple-helical substrates.
Lauer-Fields JL; Broder T; Sritharan T; Chung L; Nagase H; Fields GB
Biochemistry; 2001 May; 40(19):5795-803. PubMed ID: 11341845
[TBL] [Abstract][Full Text] [Related]
5. Molecular dynamics simulation study on the interaction of collagen-like peptides with gelatinase-A (MMP-2).
Azhagiya Singam ER; Rajapandian V; Subramanian V
Biopolymers; 2014 Jul; 101(7):779-94. PubMed ID: 24374600
[TBL] [Abstract][Full Text] [Related]
6. Alternative interdomain configurations of the full-length MMP-2 enzyme explored by molecular dynamics simulations.
Díaz N; Suárez D
J Phys Chem B; 2012 Mar; 116(9):2677-86. PubMed ID: 22324833
[TBL] [Abstract][Full Text] [Related]
7. Chemically modified tetracyclines as inhibitors of MMP-2 matrix metalloproteinase: a molecular and structural study.
Marcial BL; Sousa SF; Barbosa IL; Dos Santos HF; Ramos MJ
J Phys Chem B; 2012 Nov; 116(46):13644-54. PubMed ID: 23121406
[TBL] [Abstract][Full Text] [Related]
8. Collagenolytic Matrix Metalloproteinase Structure-Function Relationships: Insights From Molecular Dynamics Studies.
Karabencheva-Christova TG; Christov CZ; Fields GB
Adv Protein Chem Struct Biol; 2017; 109():1-24. PubMed ID: 28683915
[TBL] [Abstract][Full Text] [Related]
9. Molecular dynamics simulations of matrix metalloproteinase 2: role of the structural metal ions.
Díaz N; Suarez D
Biochemistry; 2007 Aug; 46(31):8943-52. PubMed ID: 17616173
[TBL] [Abstract][Full Text] [Related]
10. Triple-helical peptide analysis of collagenolytic protease activity.
Lauer-Fields JL; Fields GB
Biol Chem; 2002; 383(7-8):1095-105. PubMed ID: 12437092
[TBL] [Abstract][Full Text] [Related]
11. Kinetic and binding effects in peptide substrate selectivity of matrix metalloproteinase-2: Molecular dynamics and QM/MM calculations.
Díaz N; Suárez D; Suárez E
Proteins; 2010 Jan; 78(1):1-11. PubMed ID: 19585658
[TBL] [Abstract][Full Text] [Related]
12. Peptide hydrolysis catalyzed by matrix metalloproteinase 2: a computational study.
Díaz N; Suárez D
J Phys Chem B; 2008 Jul; 112(28):8412-24. PubMed ID: 18570467
[TBL] [Abstract][Full Text] [Related]
13. [A turning point in the knowledge of the structure-function-activity relations of elastin].
Alix AJ
J Soc Biol; 2001; 195(2):181-93. PubMed ID: 11727705
[TBL] [Abstract][Full Text] [Related]
14. Selective hydrolysis of triple-helical substrates by matrix metalloproteinase-2 and -9.
Lauer-Fields JL; Sritharan T; Stack MS; Nagase H; Fields GB
J Biol Chem; 2003 May; 278(20):18140-5. PubMed ID: 12642591
[TBL] [Abstract][Full Text] [Related]
15. Characterization of the mechanisms by which gelatinase A, neutrophil collagenase, and membrane-type metalloproteinase MMP-14 recognize collagen I and enzymatically process the two alpha-chains.
Gioia M; Monaco S; Fasciglione GF; Coletti A; Modesti A; Marini S; Coletta M
J Mol Biol; 2007 May; 368(4):1101-13. PubMed ID: 17379243
[TBL] [Abstract][Full Text] [Related]
16. Mapping intermolecular interactions and active site conformations: from human MMP-1 crystal structure to molecular dynamics free energy calculations.
Nash A; Birch HL; de Leeuw NH
J Biomol Struct Dyn; 2017 Feb; 35(3):564-573. PubMed ID: 26886688
[TBL] [Abstract][Full Text] [Related]
17. In vitro and in silico binding study of the peptide derived from HIV-1 CA-CTD and LysRS as a potential HIV-1 blocking site.
Na Nakorn P; Treesuwan W; Choowongkomon K; Hannongbua S; Boonyalai N
J Theor Biol; 2011 Feb; 270(1):88-97. PubMed ID: 21093454
[TBL] [Abstract][Full Text] [Related]
18. Matrix metalloproteinase triple-helical peptidase activities are differentially regulated by substrate stability.
Minond D; Lauer-Fields JL; Nagase H; Fields GB
Biochemistry; 2004 Sep; 43(36):11474-81. PubMed ID: 15350133
[TBL] [Abstract][Full Text] [Related]
19. Hydroxamate-based peptide inhibitors of matrix metalloprotease 2.
Jani M; Tordai H; Trexler M; Bányai L; Patthy L
Biochimie; 2005; 87(3-4):385-92. PubMed ID: 15781326
[TBL] [Abstract][Full Text] [Related]
20. Structural and dynamical properties of a full-length HIV-1 integrase: molecular dynamics simulations.
Wijitkosoom A; Tonmunphean S; Truong TN; Hannongbua S
J Biomol Struct Dyn; 2006 Jun; 23(6):613-24. PubMed ID: 16615807
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]