These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
165 related articles for article (PubMed ID: 24170407)
21. A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core. Zimmermann L; Stephens A; Nam SZ; Rau D; Kübler J; Lozajic M; Gabler F; Söding J; Lupas AN; Alva V J Mol Biol; 2018 Jul; 430(15):2237-2243. PubMed ID: 29258817 [TBL] [Abstract][Full Text] [Related]
22. SFESA: a web server for pairwise alignment refinement by secondary structure shifts. Tong J; Pei J; Grishin NV BMC Bioinformatics; 2015 Sep; 16(1):282. PubMed ID: 26335387 [TBL] [Abstract][Full Text] [Related]
23. T-Coffee: Tree-based consistency objective function for alignment evaluation. Magis C; Taly JF; Bussotti G; Chang JM; Di Tommaso P; Erb I; Espinosa-Carrasco J; Notredame C Methods Mol Biol; 2014; 1079():117-29. PubMed ID: 24170398 [TBL] [Abstract][Full Text] [Related]
24. The MPI Bioinformatics Toolkit for protein sequence analysis. Biegert A; Mayer C; Remmert M; Söding J; Lupas AN Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W335-9. PubMed ID: 16845021 [TBL] [Abstract][Full Text] [Related]
25. Using multiple sequence alignment editors and formatters. Mount DW Cold Spring Harb Protoc; 2009 Jul; 2009(7):pdb.top45. PubMed ID: 20147226 [TBL] [Abstract][Full Text] [Related]
26. COMA server for protein distant homology search. Margelevicius M; Laganeckas M; Venclovas C Bioinformatics; 2010 Aug; 26(15):1905-6. PubMed ID: 20529888 [TBL] [Abstract][Full Text] [Related]
28. MSACompro: improving multiple protein sequence alignment by predicted structural features. Deng X; Cheng J Methods Mol Biol; 2014; 1079():273-83. PubMed ID: 24170409 [TBL] [Abstract][Full Text] [Related]
29. T-Coffee: A novel method for fast and accurate multiple sequence alignment. Notredame C; Higgins DG; Heringa J J Mol Biol; 2000 Sep; 302(1):205-17. PubMed ID: 10964570 [TBL] [Abstract][Full Text] [Related]
30. GramAlign: fast alignment driven by grammar-based phylogeny. Russell DJ Methods Mol Biol; 2014; 1079():171-89. PubMed ID: 24170402 [TBL] [Abstract][Full Text] [Related]
31. Fast model-based protein homology detection without alignment. Hochreiter S; Heusel M; Obermayer K Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755 [TBL] [Abstract][Full Text] [Related]
32. NdPASA: a pairwise sequence alignment server for distantly related proteins. Li W; Wang J; Feng JA Bioinformatics; 2005 Oct; 21(19):3803-5. PubMed ID: 16105904 [TBL] [Abstract][Full Text] [Related]
33. Clustal Omega, accurate alignment of very large numbers of sequences. Sievers F; Higgins DG Methods Mol Biol; 2014; 1079():105-16. PubMed ID: 24170397 [TBL] [Abstract][Full Text] [Related]
34. Phylogeny-aware alignment with PRANK. Löytynoja A Methods Mol Biol; 2014; 1079():155-70. PubMed ID: 24170401 [TBL] [Abstract][Full Text] [Related]
35. Using progressive methods for global multiple sequence alignment. Mount DW Cold Spring Harb Protoc; 2009 Jul; 2009(7):pdb.top43. PubMed ID: 20147224 [TBL] [Abstract][Full Text] [Related]
36. SQUINT: a multiple alignment program and editor. Goode MG; Rodrigo AG Bioinformatics; 2007 Jun; 23(12):1553-5. PubMed ID: 17485434 [TBL] [Abstract][Full Text] [Related]
37. A local multiple alignment method for detection of non-coding RNA sequences. Tabei Y; Asai K Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823 [TBL] [Abstract][Full Text] [Related]
38. APDB: a web server to evaluate the accuracy of sequence alignments using structural information. Armougom F; Poirot O; Moretti S; Higgins DG; Bucher P; Keduas V; Notredame C Bioinformatics; 2006 Oct; 22(19):2439-40. PubMed ID: 17032685 [TBL] [Abstract][Full Text] [Related]