These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

335 related articles for article (PubMed ID: 24170408)

  • 21. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.
    Teichert F; Minning J; Bastolla U; Porto M
    BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364
    [TBL] [Abstract][Full Text] [Related]  

  • 22. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
    BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Protein multiple sequence alignment benchmarking through secondary structure prediction.
    Le Q; Sievers F; Higgins DG
    Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407
    [TBL] [Abstract][Full Text] [Related]  

  • 24. fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies.
    Tung CH; Yang JM
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W438-43. PubMed ID: 17485476
    [TBL] [Abstract][Full Text] [Related]  

  • 25. MICAlign: a sequence-to-structure alignment tool integrating multiple sources of information in conditional random fields.
    Xia X; Zhang S; Su Y; Sun Z
    Bioinformatics; 2009 Jun; 25(11):1433-4. PubMed ID: 19359356
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee.
    Armougom F; Moretti S; Poirot O; Audic S; Dumas P; Schaeli B; Keduas V; Notredame C
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W604-8. PubMed ID: 16845081
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Jalview Version 2--a multiple sequence alignment editor and analysis workbench.
    Waterhouse AM; Procter JB; Martin DM; Clamp M; Barton GJ
    Bioinformatics; 2009 May; 25(9):1189-91. PubMed ID: 19151095
    [TBL] [Abstract][Full Text] [Related]  

  • 28. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H; Zhou Y
    Bioinformatics; 2005 Sep; 21(18):3615-21. PubMed ID: 16020471
    [TBL] [Abstract][Full Text] [Related]  

  • 29. XSuLT: a web server for structural annotation and representation of sequence-structure alignments.
    Ochoa-Montaño B; Blundell TL
    Nucleic Acids Res; 2017 Jul; 45(W1):W381-W387. PubMed ID: 28510698
    [TBL] [Abstract][Full Text] [Related]  

  • 30. ComplexContact: a web server for inter-protein contact prediction using deep learning.
    Zeng H; Wang S; Zhou T; Zhao F; Li X; Wu Q; Xu J
    Nucleic Acids Res; 2018 Jul; 46(W1):W432-W437. PubMed ID: 29790960
    [TBL] [Abstract][Full Text] [Related]  

  • 31. AQUA: automated quality improvement for multiple sequence alignments.
    Muller J; Creevey CJ; Thompson JD; Arendt D; Bork P
    Bioinformatics; 2010 Jan; 26(2):263-5. PubMed ID: 19926669
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.
    Pandit SB; Skolnick J
    BMC Bioinformatics; 2008 Dec; 9():531. PubMed ID: 19077267
    [TBL] [Abstract][Full Text] [Related]  

  • 33. SAD--a normalized structural alignment database: improving sequence-structure alignments.
    Marsden B; Abagyan R
    Bioinformatics; 2004 Oct; 20(15):2333-44. PubMed ID: 15087320
    [TBL] [Abstract][Full Text] [Related]  

  • 34. The meaning of alignment: lessons from structural diversity.
    Pirovano W; Feenstra KA; Heringa J
    BMC Bioinformatics; 2008 Dec; 9():556. PubMed ID: 19105835
    [TBL] [Abstract][Full Text] [Related]  

  • 35. AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses.
    Kumar S; Skjaeveland A; Orr RJ; Enger P; Ruden T; Mevik BH; Burki F; Botnen A; Shalchian-Tabrizi K
    BMC Bioinformatics; 2009 Oct; 10():357. PubMed ID: 19863793
    [TBL] [Abstract][Full Text] [Related]  

  • 36. MultiPipMaker: a comparative alignment server for multiple DNA sequences.
    Elnitski L; Burhans R; Riemer C; Hardison R; Miller W
    Curr Protoc Bioinformatics; 2010 Jun; Chapter 10():10.4.1-10.4.14. PubMed ID: 20521245
    [TBL] [Abstract][Full Text] [Related]  

  • 37. MAGOS: multiple alignment and modelling server.
    Garnier N; Friedrich A; Bolze R; Bettler E; Moulinier L; Geourjon C; Thompson JD; Deléage G; Poch O
    Bioinformatics; 2006 Sep; 22(17):2164-5. PubMed ID: 16820425
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Reconstruction of ancestral protein sequences and its applications.
    Cai W; Pei J; Grishin NV
    BMC Evol Biol; 2004 Sep; 4():33. PubMed ID: 15377393
    [TBL] [Abstract][Full Text] [Related]  

  • 39. QSCOP-BLAST--fast retrieval of quantified structural information for protein sequences of unknown structure.
    Suhrer SJ; Gruber M; Sippl MJ
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W411-5. PubMed ID: 17478501
    [TBL] [Abstract][Full Text] [Related]  

  • 40. R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.
    Cannone JJ; Sweeney BA; Petrov AI; Gutell RR; Zirbel CL; Leontis N
    Nucleic Acids Res; 2015 Jul; 43(W1):W15-23. PubMed ID: 26048960
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 17.