These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

259 related articles for article (PubMed ID: 24180377)

  • 1. Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance.
    Chaudhary R; Burleigh JG; Fernández-Baca D
    Algorithms Mol Biol; 2013 Nov; 8(1):28. PubMed ID: 24180377
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MulRF: a software package for phylogenetic analysis using multi-copy gene trees.
    Chaudhary R; Fernández-Baca D; Burleigh JG
    Bioinformatics; 2015 Feb; 31(3):432-3. PubMed ID: 25273112
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Assessing approaches for inferring species trees from multi-copy genes.
    Chaudhary R; Boussau B; Burleigh JG; Fernández-Baca D
    Syst Biol; 2015 Mar; 64(2):325-39. PubMed ID: 25540456
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Invariant transformers of Robinson and Foulds distance matrices for Convolutional Neural Network.
    Tahiri N; Veriga A; Koshkarov A; Morozov B
    J Bioinform Comput Biol; 2022 Aug; 20(4):2250012. PubMed ID: 35798684
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A Linear Time Solution to the Labeled Robinson-Foulds Distance Problem.
    Briand S; Dessimoz C; El-Mabrouk N; Nevers Y
    Syst Biol; 2022 Oct; 71(6):1391-1403. PubMed ID: 35426933
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Are the duplication cost and Robinson-Foulds distance equivalent?
    Zheng Y; Zhang L
    J Comput Biol; 2014 Aug; 21(8):578-90. PubMed ID: 24988427
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.
    Chaudhary R; Burleigh JG; Eulenstein O
    BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S11. PubMed ID: 22759416
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Robinson-Foulds supertrees.
    Bansal MS; Burleigh JG; Eulenstein O; Fernández-Baca D
    Algorithms Mol Biol; 2010 Feb; 5():18. PubMed ID: 20181274
    [TBL] [Abstract][Full Text] [Related]  

  • 9. From gene trees to species trees II: species tree inference by minimizing deep coalescence events.
    Zhang L
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(6):1685-91. PubMed ID: 21576759
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Species tree inference by minimizing deep coalescences.
    Than C; Nakhleh L
    PLoS Comput Biol; 2009 Sep; 5(9):e1000501. PubMed ID: 19749978
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Non-parametric correction of estimated gene trees using TRACTION.
    Christensen S; Molloy EK; Vachaspati P; Yammanuru A; Warnow T
    Algorithms Mol Biol; 2020; 15():1. PubMed ID: 31911812
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A new fast method for inferring multiple consensus trees using k-medoids.
    Tahiri N; Willems M; Makarenkov V
    BMC Evol Biol; 2018 Apr; 18(1):48. PubMed ID: 29621975
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Linear-time algorithms for phylogenetic tree completion under Robinson-Foulds distance.
    Bansal MS
    Algorithms Mol Biol; 2020; 15():6. PubMed ID: 32313549
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Exact solutions for species tree inference from discordant gene trees.
    Chang WC; Górecki P; Eulenstein O
    J Bioinform Comput Biol; 2013 Oct; 11(5):1342005. PubMed ID: 24131054
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Quantification of congruence among gene trees with polytomies using overall success of resolution for phylogenomic coalescent analyses.
    Simmons MP; Goloboff PA; Stöver BC; Springer MS; Gatesy J
    Cladistics; 2023 Oct; 39(5):418-436. PubMed ID: 37096985
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A generalized Robinson-Foulds distance for labeled trees.
    Briand S; Dessimoz C; El-Mabrouk N; Lafond M; Lobinska G
    BMC Genomics; 2020 Nov; 21(Suppl 10):779. PubMed ID: 33208096
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models.
    Bansal MS; Burleigh JG; Eulenstein O
    BMC Bioinformatics; 2010 Jan; 11 Suppl 1(Suppl 1):S42. PubMed ID: 20122216
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparison of phylogenetic trees defined on different but mutually overlapping sets of taxa: A review.
    Li W; Koshkarov A; Tahiri N
    Ecol Evol; 2024 Aug; 14(8):e70054. PubMed ID: 39119174
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast local search for unrooted Robinson-Foulds supertrees.
    Chaudhary R; Burleigh JG; Fernández-Baca D
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(4):1004-13. PubMed ID: 22431553
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene  Family Tree Inference under Gene Duplication, Transfer, and Loss.
    Morel B; Kozlov AM; Stamatakis A; Szöllősi GJ
    Mol Biol Evol; 2020 Sep; 37(9):2763-2774. PubMed ID: 32502238
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.