These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

162 related articles for article (PubMed ID: 24189231)

  • 1. Advances in Rosetta structure prediction for difficult molecular-replacement problems.
    DiMaio F
    Acta Crystallogr D Biol Crystallogr; 2013 Nov; 69(Pt 11):2202-8. PubMed ID: 24189231
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Rosetta Structure Prediction as a Tool for Solving Difficult Molecular Replacement Problems.
    DiMaio F
    Methods Mol Biol; 2017; 1607():455-466. PubMed ID: 28573585
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structure prediction for CASP8 with all-atom refinement using Rosetta.
    Raman S; Vernon R; Thompson J; Tyka M; Sadreyev R; Pei J; Kim D; Kellogg E; DiMaio F; Lange O; Kinch L; Sheffler W; Kim BH; Das R; Grishin NV; Baker D
    Proteins; 2009; 77 Suppl 9(0 9):89-99. PubMed ID: 19701941
    [TBL] [Abstract][Full Text] [Related]  

  • 4. phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta.
    Terwilliger TC; Dimaio F; Read RJ; Baker D; Bunkóczi G; Adams PD; Grosse-Kunstleve RW; Afonine PV; Echols N
    J Struct Funct Genomics; 2012 Jun; 13(2):81-90. PubMed ID: 22418934
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SCEDS: protein fragments for molecular replacement in Phaser.
    McCoy AJ; Nicholls RA; Schneider TR
    Acta Crystallogr D Biol Crystallogr; 2013 Nov; 69(Pt 11):2216-25. PubMed ID: 24189233
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evaluating the usefulness of protein structure models for molecular replacement.
    Giorgetti A; Raimondo D; Miele AE; Tramontano A
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii72-6. PubMed ID: 16204129
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein structure prediction using Rosetta in CASP12.
    Ovchinnikov S; Park H; Kim DE; DiMaio F; Baker D
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):113-121. PubMed ID: 28940798
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein NMR structures refined with Rosetta have higher accuracy relative to corresponding X-ray crystal structures.
    Mao B; Tejero R; Baker D; Montelione GT
    J Am Chem Soc; 2014 Feb; 136(5):1893-906. PubMed ID: 24392845
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Molecular replacement: tricks and treats.
    Abergel C
    Acta Crystallogr D Biol Crystallogr; 2013 Nov; 69(Pt 11):2167-73. PubMed ID: 24189227
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Molecular replacement then and now.
    Scapin G
    Acta Crystallogr D Biol Crystallogr; 2013 Nov; 69(Pt 11):2266-75. PubMed ID: 24189239
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Molecular replacements.
    Ballard C; Roversi P; Walden H
    Acta Crystallogr D Biol Crystallogr; 2013 Nov; 69(Pt 11):2165-6. PubMed ID: 24189226
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Automated side-chain model building and sequence assignment by template matching.
    Terwilliger TC
    Acta Crystallogr D Biol Crystallogr; 2003 Jan; 59(Pt 1):45-9. PubMed ID: 12499538
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Practically useful: what the Rosetta protein modeling suite can do for you.
    Kaufmann KW; Lemmon GH; Deluca SL; Sheehan JH; Meiler J
    Biochemistry; 2010 Apr; 49(14):2987-98. PubMed ID: 20235548
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improved molecular replacement by density- and energy-guided protein structure optimization.
    DiMaio F; Terwilliger TC; Read RJ; Wlodawer A; Oberdorfer G; Wagner U; Valkov E; Alon A; Fass D; Axelrod HL; Das D; Vorobiev SM; Iwaï H; Pokkuluri PR; Baker D
    Nature; 2011 May; 473(7348):540-3. PubMed ID: 21532589
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SEQUENCE SLIDER: expanding polyalanine fragments for phasing with multiple side-chain hypotheses.
    Borges RJ; Meindl K; Triviño J; Sammito M; Medina A; Millán C; Alcorlo M; Hermoso JA; Fontes MRM; Usón I
    Acta Crystallogr D Struct Biol; 2020 Mar; 76(Pt 3):221-237. PubMed ID: 32133987
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Recent Advances in NMR Protein Structure Prediction with ROSETTA.
    Koehler Leman J; Künze G
    Int J Mol Sci; 2023 Apr; 24(9):. PubMed ID: 37175539
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Application of the AMPLE cluster-and-truncate approach to NMR structures for molecular replacement.
    Bibby J; Keegan RM; Mayans O; Winn MD; Rigden DJ
    Acta Crystallogr D Biol Crystallogr; 2013 Nov; 69(Pt 11):2194-201. PubMed ID: 24189230
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Molecular replacement using structure predictions from databases.
    Simpkin AJ; Thomas JMH; Simkovic F; Keegan RM; Rigden DJ
    Acta Crystallogr D Struct Biol; 2019 Dec; 75(Pt 12):1051-1062. PubMed ID: 31793899
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular replacement using ab initio polyalanine models generated with ROSETTA.
    Rigden DJ; Keegan RM; Winn MD
    Acta Crystallogr D Biol Crystallogr; 2008 Dec; 64(Pt 12):1288-91. PubMed ID: 19018106
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Iterative Molecular Dynamics-Rosetta Membrane Protein Structure Refinement Guided by Cryo-EM Densities.
    Leelananda SP; Lindert S
    J Chem Theory Comput; 2017 Oct; 13(10):5131-5145. PubMed ID: 28949136
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.