These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

207 related articles for article (PubMed ID: 24195709)

  • 1. Inference of tumor phylogenies with improved somatic mutation discovery.
    Salari R; Saleh SS; Kashef-Haghighi D; Khavari D; Newburger DE; West RB; Sidow A; Batzoglou S
    J Comput Biol; 2013 Nov; 20(11):933-44. PubMed ID: 24195709
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SNV-PPILP: refined SNV calling for tumor data using perfect phylogenies and ILP.
    van Rens KE; Mäkinen V; Tomescu AI
    Bioinformatics; 2015 Apr; 31(7):1133-5. PubMed ID: 25398608
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations.
    Liu Y; Loewer M; Aluru S; Schmidt B
    BMC Syst Biol; 2016 Aug; 10 Suppl 2(Suppl 2):47. PubMed ID: 27489955
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Accuracy and reproducibility of somatic point mutation calling in clinical-type targeted sequencing data.
    Karimnezhad A; Palidwor GA; Thavorn K; Stewart DJ; Campbell PA; Lo B; Perkins TJ
    BMC Med Genomics; 2020 Oct; 13(1):156. PubMed ID: 33059707
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors.
    Crisan A; Goya R; Ha G; Ding J; Prentice LM; Oloumi A; Senz J; Zeng T; Tse K; Delaney A; Marra MA; Huntsman DG; Hirst M; Aparicio S; Shah S
    PLoS One; 2012; 7(8):e41551. PubMed ID: 22916110
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Inferring clonal evolution of tumors from single nucleotide somatic mutations.
    Jiao W; Vembu S; Deshwar AG; Stein L; Morris Q
    BMC Bioinformatics; 2014 Feb; 15():35. PubMed ID: 24484323
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of somatic variant detection algorithms using Ion Torrent targeted deep sequencing data.
    Wang Q; Kotoula V; Hsu PC; Papadopoulou K; Ho JWK; Fountzilas G; Giannoulatou E
    BMC Med Genomics; 2019 Dec; 12(Suppl 9):181. PubMed ID: 31874647
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Germline contamination and leakage in whole genome somatic single nucleotide variant detection.
    Sendorek DH; Caloian C; Ellrott K; Bare JC; Yamaguchi TN; Ewing AD; Houlahan KE; Norman TC; Margolin AA; Stuart JM; Boutros PC
    BMC Bioinformatics; 2018 Jan; 19(1):28. PubMed ID: 29385983
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fast and scalable inference of multi-sample cancer lineages.
    Popic V; Salari R; Hajirasouliha I; Kashef-Haghighi D; West RB; Batzoglou S
    Genome Biol; 2015 May; 16(1):91. PubMed ID: 25944252
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Misannotated Multi-Nucleotide Variants in Public Cancer Genomics Datasets Lead to Inaccurate Mutation Calls with Significant Implications.
    Srinivasan S; Kalinava N; Aldana R; Li Z; van Hagen S; Rodenburg SYA; Wind-Rotolo M; Qian X; Sasson AS; Tang H; Kirov S
    Cancer Res; 2021 Jan; 81(2):282-288. PubMed ID: 33115802
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing.
    Niknafs N; Beleva-Guthrie V; Naiman DQ; Karchin R
    PLoS Comput Biol; 2015 Oct; 11(10):e1004416. PubMed ID: 26436540
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data.
    Wang W; Wang P; Xu F; Luo R; Wong MP; Lam TW; Wang J
    Bioinformatics; 2014 Sep; 30(17):2498-500. PubMed ID: 24833803
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses.
    Satas G; Zaccaria S; Mon G; Raphael BJ
    Cell Syst; 2020 Apr; 10(4):323-332.e8. PubMed ID: 32864481
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Meltos: multi-sample tumor phylogeny reconstruction for structural variants.
    Ricketts C; Seidman D; Popic V; Hormozdiari F; Batzoglou S; Hajirasouliha I
    Bioinformatics; 2020 Feb; 36(4):1082-1090. PubMed ID: 31584621
    [TBL] [Abstract][Full Text] [Related]  

  • 15. STIC: Predicting Single Nucleotide Variants and Tumor Purity in Cancer Genome.
    Yuan X; Ma C; Zhao H; Yang L; Wang S; Xi J
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2692-2701. PubMed ID: 32086221
    [TBL] [Abstract][Full Text] [Related]  

  • 16. EMVC-2: an efficient single-nucleotide variant caller based on expectation maximization.
    Dufort Y Álvarez G; Xargay-Ferrer M; Pagès-Zamora A; Ochoa I
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 37963064
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Somatic Single-Nucleotide Variant Calling from Single-Cell DNA Sequencing Data Using SCAN-SNV.
    Bahonar S; Montazeri H
    Methods Mol Biol; 2022; 2493():267-277. PubMed ID: 35751821
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A novel machine learning approach (svmSomatic) to distinguish somatic and germline mutations using next-generation sequencing data.
    Mao YF; Yuan XG; Cun YP
    Zool Res; 2021 Mar; 42(2):246-249. PubMed ID: 33709636
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sensitivity to sequencing depth in single-cell cancer genomics.
    Alves JM; Posada D
    Genome Med; 2018 Apr; 10(1):29. PubMed ID: 29661213
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Clonality inference in multiple tumor samples using phylogeny.
    Malikic S; McPherson AW; Donmez N; Sahinalp CS
    Bioinformatics; 2015 May; 31(9):1349-56. PubMed ID: 25568283
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.