These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

207 related articles for article (PubMed ID: 24195709)

  • 21. Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles.
    Subramanian A; Shackney S; Schwartz R
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(6):1422-31. PubMed ID: 24407301
    [TBL] [Abstract][Full Text] [Related]  

  • 22. A comparative analysis of algorithms for somatic SNV detection in cancer.
    Roberts ND; Kortschak RD; Parker WT; Schreiber AW; Branford S; Scott HS; Glonek G; Adelson DL
    Bioinformatics; 2013 Sep; 29(18):2223-30. PubMed ID: 23842810
    [TBL] [Abstract][Full Text] [Related]  

  • 23. GeDi: applying suffix arrays to increase the repertoire of detectable SNVs in tumour genomes.
    Coleman I; Corleone G; Arram J; Ng HC; Magnani L; Luk W
    BMC Bioinformatics; 2020 Feb; 21(1):45. PubMed ID: 32024475
    [TBL] [Abstract][Full Text] [Related]  

  • 24. ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model.
    Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
    Genome Biol; 2023 Nov; 24(1):272. PubMed ID: 38037115
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Automated reconstruction of whole-genome phylogenies from short-sequence reads.
    Bertels F; Silander OK; Pachkov M; Rainey PB; van Nimwegen E
    Mol Biol Evol; 2014 May; 31(5):1077-88. PubMed ID: 24600054
    [TBL] [Abstract][Full Text] [Related]  

  • 26. QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles.
    Van der Borght K; Thys K; Wetzels Y; Clement L; Verbist B; Reumers J; van Vlijmen H; Aerssens J
    BMC Bioinformatics; 2015 Nov; 16():379. PubMed ID: 26554718
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.
    Cole C; Krampis K; Karagiannis K; Almeida JS; Faison WJ; Motwani M; Wan Q; Golikov A; Pan Y; Simonyan V; Mazumder R
    BMC Bioinformatics; 2014 Jan; 15():28. PubMed ID: 24467687
    [TBL] [Abstract][Full Text] [Related]  

  • 28. MixClone: a mixture model for inferring tumor subclonal populations.
    Li Y; Xie X
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S1. PubMed ID: 25707430
    [TBL] [Abstract][Full Text] [Related]  

  • 29. HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations.
    Usuyama N; Shiraishi Y; Sato Y; Kume H; Homma Y; Ogawa S; Miyano S; Imoto S
    Bioinformatics; 2014 Dec; 30(23):3302-9. PubMed ID: 25123903
    [TBL] [Abstract][Full Text] [Related]  

  • 30. The use of technical replication for detection of low-level somatic mutations in next-generation sequencing.
    Kim J; Kim D; Lim JS; Maeng JH; Son H; Kang HC; Nam H; Lee JH; Kim S
    Nat Commun; 2019 Mar; 10(1):1047. PubMed ID: 30837471
    [TBL] [Abstract][Full Text] [Related]  

  • 31. In-depth comparison of somatic point mutation callers based on different tumor next-generation sequencing depth data.
    Cai L; Yuan W; Zhang Z; He L; Chou KC
    Sci Rep; 2016 Nov; 6():36540. PubMed ID: 27874022
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A method to reduce ancestry related germline false positives in tumor only somatic variant calling.
    Halperin RF; Carpten JD; Manojlovic Z; Aldrich J; Keats J; Byron S; Liang WS; Russell M; Enriquez D; Claasen A; Cherni I; Awuah B; Oppong J; Wicha MS; Newman LA; Jaigge E; Kim S; Craig DW
    BMC Med Genomics; 2017 Oct; 10(1):61. PubMed ID: 29052513
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Shimmer: detection of genetic alterations in tumors using next-generation sequence data.
    Hansen NF; Gartner JJ; Mei L; Samuels Y; Mullikin JC
    Bioinformatics; 2013 Jun; 29(12):1498-503. PubMed ID: 23620360
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data.
    Ainscough BJ; Barnell EK; Ronning P; Campbell KM; Wagner AH; Fehniger TA; Dunn GP; Uppaluri R; Govindan R; Rohan TE; Griffith M; Mardis ER; Swamidass SJ; Griffith OL
    Nat Genet; 2018 Dec; 50(12):1735-1743. PubMed ID: 30397337
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Ensemble-Based Somatic Mutation Calling in Cancer Genomes.
    Huang W; Guo YA; Chang MM; Skanderup AJ
    Methods Mol Biol; 2020; 2120():37-46. PubMed ID: 32124310
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Comparing a few SNP calling algorithms using low-coverage sequencing data.
    Yu X; Sun S
    BMC Bioinformatics; 2013 Sep; 14():274. PubMed ID: 24044377
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms.
    Greminger MP; Stölting KN; Nater A; Goossens B; Arora N; Bruggmann R; Patrignani A; Nussberger B; Sharma R; Kraus RH; Ambu LN; Singleton I; Chikhi L; van Schaik CP; Krützen M
    BMC Genomics; 2014 Jan; 15():16. PubMed ID: 24405840
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Integrating SNVs and CNAs on a phylogenetic tree from single-cell DNA sequencing data.
    Zhang L; Bass HW; Irianto J; Mallory X
    Genome Res; 2023 Dec; 33(11):2002-2017. PubMed ID: 37993137
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.
    Ding J; Bashashati A; Roth A; Oloumi A; Tse K; Zeng T; Haffari G; Hirst M; Marra MA; Condon A; Aparicio S; Shah SP
    Bioinformatics; 2012 Jan; 28(2):167-75. PubMed ID: 22084253
    [TBL] [Abstract][Full Text] [Related]  

  • 40. multiSNV: a probabilistic approach for improving detection of somatic point mutations from multiple related tumour samples.
    Josephidou M; Lynch AG; Tavaré S
    Nucleic Acids Res; 2015 May; 43(9):e61. PubMed ID: 25722372
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.