537 related articles for article (PubMed ID: 24206606)
1. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
Guo W; Fiziev P; Yan W; Cokus S; Sun X; Zhang MQ; Chen PY; Pellegrini M
BMC Genomics; 2013 Nov; 14():774. PubMed ID: 24206606
[TBL] [Abstract][Full Text] [Related]
2. BS-Seeker3: ultrafast pipeline for bisulfite sequencing.
Huang KYY; Huang YJ; Chen PY
BMC Bioinformatics; 2018 Apr; 19(1):111. PubMed ID: 29614954
[TBL] [Abstract][Full Text] [Related]
3. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
[TBL] [Abstract][Full Text] [Related]
4. BS Seeker: precise mapping for bisulfite sequencing.
Chen PY; Cokus SJ; Pellegrini M
BMC Bioinformatics; 2010 Apr; 11():203. PubMed ID: 20416082
[TBL] [Abstract][Full Text] [Related]
5. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
[TBL] [Abstract][Full Text] [Related]
6. Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.
Prezza N; Vezzi F; Käller M; Policriti A
BMC Bioinformatics; 2016 Mar; 17 Suppl 4(Suppl 4):69. PubMed ID: 26961371
[TBL] [Abstract][Full Text] [Related]
7. An integrative approach for efficient analysis of whole genome bisulfite sequencing data.
Lee JH; Park SJ; Kenta N
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S14. PubMed ID: 26680746
[TBL] [Abstract][Full Text] [Related]
8. Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.
Stevens M; Cheng JB; Li D; Xie M; Hong C; Maire CL; Ligon KL; Hirst M; Marra MA; Costello JF; Wang T
Genome Res; 2013 Sep; 23(9):1541-53. PubMed ID: 23804401
[TBL] [Abstract][Full Text] [Related]
9. Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data.
Hong C; Clement NL; Clement S; Hammoud SS; Carrell DT; Cairns BR; Snell Q; Clement MJ; Johnson WE
BMC Bioinformatics; 2013 Nov; 14():337. PubMed ID: 24261665
[TBL] [Abstract][Full Text] [Related]
10. DNA Methylation Profiling Using Long-Read Single Molecule Real-Time Bisulfite Sequencing (SMRT-BS).
Yang Y; Scott SA
Methods Mol Biol; 2017; 1654():125-134. PubMed ID: 28986786
[TBL] [Abstract][Full Text] [Related]
11. Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis.
Nunn A; Otto C; Stadler PF; Langenberger D
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33624017
[TBL] [Abstract][Full Text] [Related]
12. DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS).
Bonora G; Rubbi L; Morselli M; Ma F; Chronis C; Plath K; Pellegrini M
PLoS One; 2019; 14(4):e0214368. PubMed ID: 30946758
[TBL] [Abstract][Full Text] [Related]
13. VAliBS: a visual aligner for bisulfite sequences.
Li M; Huang P; Yan X; Wang J; Pan Y; Wu FX
BMC Bioinformatics; 2017 Oct; 18(Suppl 12):410. PubMed ID: 29072146
[TBL] [Abstract][Full Text] [Related]
14. Cloud-BS: A MapReduce-based bisulfite sequencing aligner on cloud.
Choi J; Park Y; Kim S; Chae H
J Bioinform Comput Biol; 2018 Dec; 16(6):1840028. PubMed ID: 30567473
[TBL] [Abstract][Full Text] [Related]
15. MOABS: model based analysis of bisulfite sequencing data.
Sun D; Xi Y; Rodriguez B; Park HJ; Tong P; Meong M; Goodell MA; Li W
Genome Biol; 2014 Feb; 15(2):R38. PubMed ID: 24565500
[TBL] [Abstract][Full Text] [Related]
16. Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis.
Jiang P; Sun K; Lun FM; Guo AM; Wang H; Chan KC; Chiu RW; Lo YM; Sun H
PLoS One; 2014; 9(6):e100360. PubMed ID: 24945300
[TBL] [Abstract][Full Text] [Related]
17. Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.
Toh H; Shirane K; Miura F; Kubo N; Ichiyanagi K; Hayashi K; Saitou M; Suyama M; Ito T; Sasaki H
BMC Genomics; 2017 Jan; 18(1):31. PubMed ID: 28056787
[TBL] [Abstract][Full Text] [Related]
18. SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.
Sun Z; Baheti S; Middha S; Kanwar R; Zhang Y; Li X; Beutler AS; Klee E; Asmann YW; Thompson EA; Kocher JP
Bioinformatics; 2012 Aug; 28(16):2180-1. PubMed ID: 22689387
[TBL] [Abstract][Full Text] [Related]
19. Methodological aspects of whole-genome bisulfite sequencing analysis.
Adusumalli S; Mohd Omar MF; Soong R; Benoukraf T
Brief Bioinform; 2015 May; 16(3):369-79. PubMed ID: 24867940
[TBL] [Abstract][Full Text] [Related]
20. Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.
Kunde-Ramamoorthy G; Coarfa C; Laritsky E; Kessler NJ; Harris RA; Xu M; Chen R; Shen L; Milosavljevic A; Waterland RA
Nucleic Acids Res; 2014 Apr; 42(6):e43. PubMed ID: 24391148
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
