281 related articles for article (PubMed ID: 24243213)
1. A method for discovery of genome-wide SNP between any two genotypes from whole-genome re-sequencing data.
Krishnan SG; Waters DL; Henry RJ
Methods Mol Biol; 2014; 1099():287-94. PubMed ID: 24243213
[TBL] [Abstract][Full Text] [Related]
2. Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing.
Subbaiyan GK; Waters DL; Katiyar SK; Sadananda AR; Vaddadi S; Henry RJ
Plant Biotechnol J; 2012 Aug; 10(6):623-34. PubMed ID: 22222031
[TBL] [Abstract][Full Text] [Related]
3. mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development.
Lv Y; Liu Y; Zhao H
BMC Genomics; 2016 Apr; 17():290. PubMed ID: 27079510
[TBL] [Abstract][Full Text] [Related]
4. Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies.
Torkamaneh D; Laroche J; Belzile F
PLoS One; 2016; 11(8):e0161333. PubMed ID: 27547936
[TBL] [Abstract][Full Text] [Related]
5. Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome.
Azam S; Thakur V; Ruperao P; Shah T; Balaji J; Amindala B; Farmer AD; Studholme DJ; May GD; Edwards D; Jones JD; Varshney RK
Am J Bot; 2012 Feb; 99(2):186-92. PubMed ID: 22301893
[TBL] [Abstract][Full Text] [Related]
6. SNP discovery by transcriptome pyrosequencing.
Barbazuk WB; Schnable PS
Methods Mol Biol; 2011; 729():225-46. PubMed ID: 21365494
[TBL] [Abstract][Full Text] [Related]
7. Mining SNPs from DNA sequence data; computational approaches to SNP discovery and analysis.
van Oeveren J; Janssen A
Methods Mol Biol; 2009; 578():73-91. PubMed ID: 19768587
[TBL] [Abstract][Full Text] [Related]
8. Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation.
Brouard JS; Boyle B; Ibeagha-Awemu EM; Bissonnette N
BMC Genet; 2017 Apr; 18(1):32. PubMed ID: 28381212
[TBL] [Abstract][Full Text] [Related]
9. Development of genome-wide insertion and deletion markers for maize, based on next-generation sequencing data.
Liu J; Qu J; Yang C; Tang D; Li J; Lan H; Rong T
BMC Genomics; 2015 Aug; 16(1):601. PubMed ID: 26269146
[TBL] [Abstract][Full Text] [Related]
10. Genome-wide polymorphisms between the parents of an elite hybrid rice and the development of a novel set of PCR-based InDel markers.
Wang K; Zhuang JY; Huang DR; Ying JZ; Fan YY
Genet Mol Res; 2015 Apr; 14(2):3209-22. PubMed ID: 25966087
[TBL] [Abstract][Full Text] [Related]
11. Analysis of high-throughput sequencing data.
Mane SP; Modise T; Sobral BW
Methods Mol Biol; 2011; 678():1-11. PubMed ID: 20931368
[TBL] [Abstract][Full Text] [Related]
12. Bioinformatics: identification of markers from next-generation sequence data.
Ruperao P; Edwards D
Methods Mol Biol; 2015; 1245():29-47. PubMed ID: 25373747
[TBL] [Abstract][Full Text] [Related]
13. SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates.
Gonçalves da Silva A; Barendse W; Kijas JW; Barris WC; McWilliam S; Bunch RJ; McCullough R; Harrison B; Hoelzel AR; England PR
Mol Ecol Resour; 2015 Jul; 15(4):723-36. PubMed ID: 25388640
[TBL] [Abstract][Full Text] [Related]
14. Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings.
Roux PF; Marthey S; Djari A; Moroldo M; Esquerré D; Estellé J; Klopp C; Lagarrigue S; Demeure O
Anim Genet; 2015 Feb; 46(1):82-6. PubMed ID: 25515399
[TBL] [Abstract][Full Text] [Related]
15. Abundant sequence divergence in the native Japanese cattle Mishima-Ushi (Bos taurus) detected using whole-genome sequencing.
Tsuda K; Kawahara-Miki R; Sano S; Imai M; Noguchi T; Inayoshi Y; Kono T
Genomics; 2013 Oct; 102(4):372-8. PubMed ID: 23938316
[TBL] [Abstract][Full Text] [Related]
16. SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.
Van Tassell CP; Smith TP; Matukumalli LK; Taylor JF; Schnabel RD; Lawley CT; Haudenschild CD; Moore SS; Warren WC; Sonstegard TS
Nat Methods; 2008 Mar; 5(3):247-52. PubMed ID: 18297082
[TBL] [Abstract][Full Text] [Related]
17. Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes.
Das A; Panitz F; Gregersen VR; Bendixen C; Holm LE
BMC Genomics; 2015 Dec; 16():1043. PubMed ID: 26645365
[TBL] [Abstract][Full Text] [Related]
18. Molecular characterization of proton beam-induced mutations in soybean using genotyping-by-sequencing.
Kim WJ; Ryu J; Im J; Kim SH; Kang SY; Lee JH; Jo SH; Ha BK
Mol Genet Genomics; 2018 Oct; 293(5):1169-1180. PubMed ID: 29785615
[TBL] [Abstract][Full Text] [Related]
19. Computational identification and analysis of single-nucleotide polymorphisms and insertions/deletions in expressed sequence tag data of Eucalyptus.
Singh TR; Gupta A; Riju A; Mahalaxmi M; Seal A; Arunachalam V
J Genet; 2011 Aug; 90(2):e34-8. PubMed ID: 21873771
[No Abstract] [Full Text] [Related]
20. Genome-wide DNA polymorphism in the indica rice varieties RGD-7S and Taifeng B as revealed by whole genome re-sequencing.
Fu CY; Liu WG; Liu DL; Li JH; Zhu MS; Liao YL; Liu ZR; Zeng XQ; Wang F
Genome; 2016 Mar; 59(3):197-207. PubMed ID: 26926666
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]