BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

246 related articles for article (PubMed ID: 24243847)

  • 1. Phylo SI: a new genome-wide approach for prokaryotic phylogeny.
    Shifman A; Ninyo N; Gophna U; Snir S
    Nucleic Acids Res; 2014 Feb; 42(4):2391-404. PubMed ID: 24243847
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SyntTax: a web server linking synteny to prokaryotic taxonomy.
    Oberto J
    BMC Bioinformatics; 2013 Jan; 14():4. PubMed ID: 23323735
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genome trees constructed using five different approaches suggest new major bacterial clades.
    Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
    BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.
    Mirkin BG; Fenner TI; Galperin MY; Koonin EV
    BMC Evol Biol; 2003 Jan; 3():2. PubMed ID: 12515582
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data.
    Lemoine F; Lespinet O; Labedan B
    BMC Evol Biol; 2007 Nov; 7():237. PubMed ID: 18047665
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Synteny footprints provide clearer phylogenetic signal than sequence data for prokaryotic classification.
    Sevillya G; Snir S
    Mol Phylogenet Evol; 2019 Jul; 136():128-137. PubMed ID: 30946898
    [TBL] [Abstract][Full Text] [Related]  

  • 7. AnnoTree: visualization and exploration of a functionally annotated microbial tree of life.
    Mendler K; Chen H; Parks DH; Lobb B; Hug LA; Doxey AC
    Nucleic Acids Res; 2019 May; 47(9):4442-4448. PubMed ID: 31081040
    [TBL] [Abstract][Full Text] [Related]  

  • 8. En route to a genome-based classification of Archaea and Bacteria?
    Klenk HP; Göker M
    Syst Appl Microbiol; 2010 Jun; 33(4):175-82. PubMed ID: 20409658
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ShadowCaster: Compositional Methods under the Shadow of Phylogenetic Models to Detect Horizontal Gene Transfers in Prokaryotes.
    Sánchez-Soto D; Agüero-Chapin G; Armijos-Jaramillo V; Perez-Castillo Y; Tejera E; Antunes A; Sánchez-Rodríguez A
    Genes (Basel); 2020 Jul; 11(7):. PubMed ID: 32645885
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The Turbulent Network Dynamics of Microbial Evolution and the Statistical Tree of Life.
    Koonin EV
    J Mol Evol; 2015 Jun; 80(5-6):244-50. PubMed ID: 25894542
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Horizontal Gene Transfer Phylogenetics: A Random Walk Approach.
    Sevillya G; Doerr D; Lerner Y; Stoye J; Steel M; Snir S
    Mol Biol Evol; 2020 May; 37(5):1470-1479. PubMed ID: 31845962
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The balance of driving forces during genome evolution in prokaryotes.
    Kunin V; Ouzounis CA
    Genome Res; 2003 Jul; 13(7):1589-94. PubMed ID: 12840037
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes.
    Lemoine F; Labedan B; Lespinet O
    BMC Bioinformatics; 2008 Dec; 9():536. PubMed ID: 19087285
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Recovering the treelike trend of evolution despite extensive lateral genetic transfer: a probabilistic analysis.
    Roch S; Snir S
    J Comput Biol; 2013 Feb; 20(2):93-112. PubMed ID: 23383996
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparative genomics analysis of completely sequenced microbial genomes reveals the ubiquity of N-linked glycosylation in prokaryotes.
    Kumar M; Balaji PV
    Mol Biosyst; 2011 May; 7(5):1629-45. PubMed ID: 21387023
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.
    Koonin EV; Wolf YI
    Nucleic Acids Res; 2008 Dec; 36(21):6688-719. PubMed ID: 18948295
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods.
    Bernard G; Stephens TG; González-Pech RA; Chan CX
    Methods Mol Biol; 2021; 2242():69-76. PubMed ID: 33961218
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Reticulate classification of mosaic microbial genomes using NeAT website.
    Lima-Mendez G
    Methods Mol Biol; 2012; 804():81-91. PubMed ID: 22144149
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.
    Podell S; Gaasterland T; Allen EE
    BMC Bioinformatics; 2008 Oct; 9():419. PubMed ID: 18840280
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Horizontal Gene Transfer Building Prokaryote Genomes: Genes Related to Exchange Between Cell and Environment are Frequently Transferred.
    Paquola ACM; Asif H; Pereira CAB; Feltes BC; Bonatto D; Lima WC; Menck CFM
    J Mol Evol; 2018 Apr; 86(3-4):190-203. PubMed ID: 29556740
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.