These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
150 related articles for article (PubMed ID: 24268022)
1. Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment. Yang Y; Maxwell A; Zhang X; Wang N; Perkins EJ; Zhang C; Gong P BMC Bioinformatics; 2013; 14 Suppl 14(Suppl 14):S3. PubMed ID: 24268022 [TBL] [Abstract][Full Text] [Related]
2. MICRAT: a novel algorithm for inferring gene regulatory networks using time series gene expression data. Yang B; Xu Y; Maxwell A; Koh W; Gong P; Zhang C BMC Syst Biol; 2018 Dec; 12(Suppl 7):115. PubMed ID: 30547796 [TBL] [Abstract][Full Text] [Related]
3. Reconstructing Genetic Regulatory Networks Using Two-Step Algorithms with the Differential Equation Models of Neural Networks. Chen CK Interdiscip Sci; 2018 Dec; 10(4):823-835. PubMed ID: 28748400 [TBL] [Abstract][Full Text] [Related]
4. Gene regulatory networks on transfer entropy (GRNTE): a novel approach to reconstruct gene regulatory interactions applied to a case study for the plant pathogen Phytophthora infestans. Castro JC; Valdés I; Gonzalez-García LN; Danies G; Cañas S; Winck FV; Ñústez CE; Restrepo S; Riaño-Pachón DM Theor Biol Med Model; 2019 Apr; 16(1):7. PubMed ID: 30961611 [TBL] [Abstract][Full Text] [Related]
5. Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation. Pinna A; Heise S; Flassig RJ; de la Fuente A; Klamt S BMC Syst Biol; 2013 Aug; 7():73. PubMed ID: 23924435 [TBL] [Abstract][Full Text] [Related]
6. Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli. Babu M; Gagarinova A; Emili A Methods Mol Biol; 2011; 781():99-126. PubMed ID: 21877280 [TBL] [Abstract][Full Text] [Related]
7. Natural Cubic Spline Regression Modeling Followed by Dynamic Network Reconstruction for the Identification of Radiation-Sensitivity Gene Association Networks from Time-Course Transcriptome Data. Michna A; Braselmann H; Selmansberger M; Dietz A; Hess J; Gomolka M; Hornhardt S; Blüthgen N; Zitzelsberger H; Unger K PLoS One; 2016; 11(8):e0160791. PubMed ID: 27505168 [TBL] [Abstract][Full Text] [Related]
8. Inference of gene pathways using mixture Bayesian networks. Ko Y; Zhai C; Rodriguez-Zas S BMC Syst Biol; 2009 May; 3():54. PubMed ID: 19454027 [TBL] [Abstract][Full Text] [Related]
9. Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes. Chu JH; Lazarus R; Carey VJ; Raby BA BMC Syst Biol; 2011 May; 5():89. PubMed ID: 21627793 [TBL] [Abstract][Full Text] [Related]
10. Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli. Babu M; Gagarinova A; Greenblatt J; Emili A Methods Mol Biol; 2011; 765():125-53. PubMed ID: 21815091 [TBL] [Abstract][Full Text] [Related]
12. Qualitative and quantitative concentration-response modelling of gene co-expression networks to unlock hepatotoxic mechanisms for next generation chemical safety assessment. Kunnen SJ; Arnesdotter E; Willenbockel CT; Vinken M; van de Water B ALTEX; 2024; 41(2):213-232. PubMed ID: 38376873 [TBL] [Abstract][Full Text] [Related]
13. Influence maximization in time bounded network identifies transcription factors regulating perturbed pathways. Jo K; Jung I; Moon JH; Kim S Bioinformatics; 2016 Jun; 32(12):i128-i136. PubMed ID: 27307609 [TBL] [Abstract][Full Text] [Related]
14. SIN-KNO: A method of gene regulatory network inference using single-cell transcription and gene knockout data. Wang H; Lian Y; Li C; Ma Y; Yan Z; Dong C J Bioinform Comput Biol; 2019 Dec; 17(6):1950035. PubMed ID: 32019417 [TBL] [Abstract][Full Text] [Related]
15. Path2enet: generation of human pathway-derived networks in an expression specific context. Droste C; De Las Rivas J BMC Genomics; 2016 Oct; 17(Suppl 8):731. PubMed ID: 27801297 [TBL] [Abstract][Full Text] [Related]
16. Assessing the toxicity of naphthenic acids using a microbial genome wide live cell reporter array system. Zhang X; Wiseman S; Yu H; Liu H; Giesy JP; Hecker M Environ Sci Technol; 2011 Mar; 45(5):1984-91. PubMed ID: 21309546 [TBL] [Abstract][Full Text] [Related]
17. Biological Network Inference and analysis using SEBINI and CABIN. Taylor R; Singhal M Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531 [TBL] [Abstract][Full Text] [Related]
18. TimeXNet: identifying active gene sub-networks using time-course gene expression profiles. Patil A; Nakai K BMC Syst Biol; 2014; 8 Suppl 4(Suppl 4):S2. PubMed ID: 25522063 [TBL] [Abstract][Full Text] [Related]
19. Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO. Zuo Y; Cui Y; Yu G; Li R; Ressom HW BMC Bioinformatics; 2017 Feb; 18(1):99. PubMed ID: 28187708 [TBL] [Abstract][Full Text] [Related]