191 related articles for article (PubMed ID: 24271386)
1. OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sites.
Shazman S; Lee H; Socol Y; Mann RS; Honig B
Nucleic Acids Res; 2014 Jan; 42(Database issue):D167-71. PubMed ID: 24271386
[TBL] [Abstract][Full Text] [Related]
2. REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.
Gallo SM; Gerrard DT; Miner D; Simich M; Des Soye B; Bergman CM; Halfon MS
Nucleic Acids Res; 2011 Jan; 39(Database issue):D118-23. PubMed ID: 20965965
[TBL] [Abstract][Full Text] [Related]
3. [Integration of data obtained by different experimental methods to determine the motifs in DNA sequences recognized by transcription-regulating factors].
Kulakovskiĭ IV; Makeev VIu
Biofizika; 2009; 54(6):965-74. PubMed ID: 20067172
[TBL] [Abstract][Full Text] [Related]
4. FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system.
Zhu LJ; Christensen RG; Kazemian M; Hull CJ; Enuameh MS; Basciotta MD; Brasefield JA; Zhu C; Asriyan Y; Lapointe DS; Sinha S; Wolfe SA; Brodsky MH
Nucleic Acids Res; 2011 Jan; 39(Database issue):D111-7. PubMed ID: 21097781
[TBL] [Abstract][Full Text] [Related]
5. footprintDB: a database of transcription factors with annotated cis elements and binding interfaces.
Sebastian A; Contreras-Moreira B
Bioinformatics; 2014 Jan; 30(2):258-65. PubMed ID: 24234003
[TBL] [Abstract][Full Text] [Related]
6. Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins.
Kribelbauer JF; Loker RE; Feng S; Rastogi C; Abe N; Rube HT; Bussemaker HJ; Mann RS
Mol Cell; 2020 Apr; 78(1):152-167.e11. PubMed ID: 32053778
[TBL] [Abstract][Full Text] [Related]
7. REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.
Halfon MS; Gallo SM; Bergman CM
Nucleic Acids Res; 2008 Jan; 36(Database issue):D594-8. PubMed ID: 18039705
[TBL] [Abstract][Full Text] [Related]
8. Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
Bergman CM; Carlson JW; Celniker SE
Bioinformatics; 2005 Apr; 21(8):1747-9. PubMed ID: 15572468
[TBL] [Abstract][Full Text] [Related]
9. FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database.
Pfreundt U; James DP; Tweedie S; Wilson D; Teichmann SA; Adryan B
Nucleic Acids Res; 2010 Jan; 38(Database issue):D443-7. PubMed ID: 19884132
[TBL] [Abstract][Full Text] [Related]
10. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes.
Matys V; Kel-Margoulis OV; Fricke E; Liebich I; Land S; Barre-Dirrie A; Reuter I; Chekmenev D; Krull M; Hornischer K; Voss N; Stegmaier P; Lewicki-Potapov B; Saxel H; Kel AE; Wingender E
Nucleic Acids Res; 2006 Jan; 34(Database issue):D108-10. PubMed ID: 16381825
[TBL] [Abstract][Full Text] [Related]
11. TFBSshape: a motif database for DNA shape features of transcription factor binding sites.
Yang L; Zhou T; Dror I; Mathelier A; Wasserman WW; Gordân R; Rohs R
Nucleic Acids Res; 2014 Jan; 42(Database issue):D148-55. PubMed ID: 24214955
[TBL] [Abstract][Full Text] [Related]
12. A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data.
He X; Chen CC; Hong F; Fang F; Sinha S; Ng HH; Zhong S
PLoS One; 2009 Dec; 4(12):e8155. PubMed ID: 19956545
[TBL] [Abstract][Full Text] [Related]
13. FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster.
Adryan B; Teichmann SA
Bioinformatics; 2006 Jun; 22(12):1532-3. PubMed ID: 16613907
[TBL] [Abstract][Full Text] [Related]
14. Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development.
Kazemian M; Pham H; Wolfe SA; Brodsky MH; Sinha S
Nucleic Acids Res; 2013 Sep; 41(17):8237-52. PubMed ID: 23847101
[TBL] [Abstract][Full Text] [Related]
15. Automated protein-DNA interaction screening of Drosophila regulatory elements.
Hens K; Feuz JD; Isakova A; Iagovitina A; Massouras A; Bryois J; Callaerts P; Celniker SE; Deplancke B
Nat Methods; 2011 Oct; 8(12):1065-70. PubMed ID: 22037703
[TBL] [Abstract][Full Text] [Related]
16. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system.
Noyes MB; Meng X; Wakabayashi A; Sinha S; Brodsky MH; Wolfe SA
Nucleic Acids Res; 2008 May; 36(8):2547-60. PubMed ID: 18332042
[TBL] [Abstract][Full Text] [Related]
17. A Comprehensive Drosophila melanogaster Transcription Factor Interactome.
Shokri L; Inukai S; Hafner A; Weinand K; Hens K; Vedenko A; Gisselbrecht SS; Dainese R; Bischof J; Furger E; Feuz JD; Basler K; Deplancke B; Bulyk ML
Cell Rep; 2019 Apr; 27(3):955-970.e7. PubMed ID: 30995488
[TBL] [Abstract][Full Text] [Related]
18. CCAT: Combinatorial Code Analysis Tool for transcriptional regulation.
Jiang P; Singh M
Nucleic Acids Res; 2014 Mar; 42(5):2833-47. PubMed ID: 24366875
[TBL] [Abstract][Full Text] [Related]
19. Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors.
Sosinsky A; Bonin CP; Mann RS; Honig B
Nucleic Acids Res; 2003 Jul; 31(13):3589-92. PubMed ID: 12824372
[TBL] [Abstract][Full Text] [Related]
20. Covariation between homeodomain transcription factors and the shape of their DNA binding sites.
Dror I; Zhou T; Mandel-Gutfreund Y; Rohs R
Nucleic Acids Res; 2014 Jan; 42(1):430-41. PubMed ID: 24078250
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
