175 related articles for article (PubMed ID: 24297532)
1. Sharing information to reconstruct patient-specific pathways in heterogeneous diseases.
Gitter A; Braunstein A; Pagnani A; Baldassi C; Borgs C; Chayes J; Zecchina R; Fraenkel E
Pac Symp Biocomput; 2014; ():39-50. PubMed ID: 24297532
[TBL] [Abstract][Full Text] [Related]
2. Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology.
Santra T; Kolch W; Kholodenko BN
BMC Syst Biol; 2013 Jul; 7():57. PubMed ID: 23829771
[TBL] [Abstract][Full Text] [Related]
3. The node-weighted Steiner tree approach to identify elements of cancer-related signaling pathways.
Sun Y; Ma C; Halgamuge S
BMC Bioinformatics; 2017 Dec; 18(Suppl 16):551. PubMed ID: 29297291
[TBL] [Abstract][Full Text] [Related]
4. Simultaneous identification of multiple driver pathways in cancer.
Leiserson MD; Blokh D; Sharan R; Raphael BJ
PLoS Comput Biol; 2013; 9(5):e1003054. PubMed ID: 23717195
[TBL] [Abstract][Full Text] [Related]
5. Protein interaction disruption in cancer.
Ruffalo M; Bar-Joseph Z
BMC Cancer; 2019 Apr; 19(1):370. PubMed ID: 31014259
[TBL] [Abstract][Full Text] [Related]
6. Frequent mutations in acetylation and ubiquitination sites suggest novel driver mechanisms of cancer.
Narayan S; Bader GD; Reimand J
Genome Med; 2016 May; 8(1):55. PubMed ID: 27175787
[TBL] [Abstract][Full Text] [Related]
7. GSGS: a computational approach to reconstruct signaling pathway structures from gene sets.
Acharya L; Judeh T; Duan Z; Rabbat M; Zhu D
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(2):438-50. PubMed ID: 22025758
[TBL] [Abstract][Full Text] [Related]
8. Prioritization of cancer driver gene with prize-collecting steiner tree by introducing an edge weighted strategy in the personalized gene interaction network.
Zhang SW; Wang ZN; Li Y; Guo WF
BMC Bioinformatics; 2022 Aug; 23(1):341. PubMed ID: 35974311
[TBL] [Abstract][Full Text] [Related]
9. Sensitive detection of pathway perturbations in cancers.
Rivera CG; Tyler BM; Murali TM
BMC Bioinformatics; 2012 Mar; 13 Suppl 3(Suppl 3):S9. PubMed ID: 22536907
[TBL] [Abstract][Full Text] [Related]
10. Simultaneous inference of cancer pathways and tumor progression from cross-sectional mutation data.
Raphael BJ; Vandin F
J Comput Biol; 2015 Jun; 22(6):510-27. PubMed ID: 25785493
[TBL] [Abstract][Full Text] [Related]
11. Detection of driver pathways using mutated gene network in cancer.
Li F; Gao L; Ma X; Yang X
Mol Biosyst; 2016 Jun; 12(7):2135-41. PubMed ID: 27118146
[TBL] [Abstract][Full Text] [Related]
12. Simultaneous Integration of Multi-omics Data Improves the Identification of Cancer Driver Modules.
Silverbush D; Cristea S; Yanovich-Arad G; Geiger T; Beerenwinkel N; Sharan R
Cell Syst; 2019 May; 8(5):456-466.e5. PubMed ID: 31103572
[TBL] [Abstract][Full Text] [Related]
13. Identification of alterations in the Jacobian of biochemical reaction networks from steady state covariance data at two conditions.
Kügler P; Yang W
J Math Biol; 2014 Jun; 68(7):1757-83. PubMed ID: 23708492
[TBL] [Abstract][Full Text] [Related]
14. Computational approaches for the identification of cancer genes and pathways.
Dimitrakopoulos CM; Beerenwinkel N
Wiley Interdiscip Rev Syst Biol Med; 2017 Jan; 9(1):. PubMed ID: 27863091
[TBL] [Abstract][Full Text] [Related]
15. Structure-Based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces.
Engin HB; Kreisberg JF; Carter H
PLoS One; 2016; 11(4):e0152929. PubMed ID: 27043210
[TBL] [Abstract][Full Text] [Related]
16. Mapping the protein-protein and genetic interactions of cancer to guide precision medicine.
Bouhaddou M; Eckhardt M; Chi Naing ZZ; Kim M; Ideker T; Krogan NJ
Curr Opin Genet Dev; 2019 Feb; 54():110-117. PubMed ID: 31288129
[TBL] [Abstract][Full Text] [Related]
17. Increased signaling entropy in cancer requires the scale-free property of protein interaction networks.
Teschendorff AE; Banerji CR; Severini S; Kuehn R; Sollich P
Sci Rep; 2015 Apr; 5():9646. PubMed ID: 25919796
[TBL] [Abstract][Full Text] [Related]
18. DART: Denoising Algorithm based on Relevance network Topology improves molecular pathway activity inference.
Jiao Y; Lawler K; Patel GS; Purushotham A; Jones AF; Grigoriadis A; Tutt A; Ng T; Teschendorff AE
BMC Bioinformatics; 2011 Oct; 12():403. PubMed ID: 22011170
[TBL] [Abstract][Full Text] [Related]
19. Classifying tumors by supervised network propagation.
Zhang W; Ma J; Ideker T
Bioinformatics; 2018 Jul; 34(13):i484-i493. PubMed ID: 29949979
[TBL] [Abstract][Full Text] [Related]
20. HER2+ Cancer Cell Dependence on PI3K vs. MAPK Signaling Axes Is Determined by Expression of EGFR, ERBB3 and CDKN1B.
Kirouac DC; Du J; Lahdenranta J; Onsum MD; Nielsen UB; Schoeberl B; McDonagh CF
PLoS Comput Biol; 2016 Apr; 12(4):e1004827. PubMed ID: 27035903
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]