176 related articles for article (PubMed ID: 24299119)
1. Image-level and group-level models for Drosophila gene expression pattern annotation.
Sun Q; Muckatira S; Yuan L; Ji S; Newfeld S; Kumar S; Ye J
BMC Bioinformatics; 2013 Dec; 14():350. PubMed ID: 24299119
[TBL] [Abstract][Full Text] [Related]
2. Learning sparse representations for fruit-fly gene expression pattern image annotation and retrieval.
Yuan L; Woodard A; Ji S; Jiang Y; Zhou ZH; Kumar S; Ye J
BMC Bioinformatics; 2012 May; 13():107. PubMed ID: 22621237
[TBL] [Abstract][Full Text] [Related]
3. Drosophila gene expression pattern annotation through multi-instance multi-label learning.
Li YX; Ji S; Kumar S; Ye J; Zhou ZH
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):98-112. PubMed ID: 21519115
[TBL] [Abstract][Full Text] [Related]
4. Automated gene expression pattern annotation in the mouse brain.
Yang T; Zhao X; Lin B; Zeng T; Ji S; Ye J
Pac Symp Biocomput; 2015; 20():144-55. PubMed ID: 25592576
[TBL] [Abstract][Full Text] [Related]
5. A bag-of-words approach for Drosophila gene expression pattern annotation.
Ji S; Li YX; Zhou ZH; Kumar S; Ye J
BMC Bioinformatics; 2009 Apr; 10():119. PubMed ID: 19383139
[TBL] [Abstract][Full Text] [Related]
6. Joint stage recognition and anatomical annotation of Drosophila gene expression patterns.
Cai X; Wang H; Huang H; Ding C
Bioinformatics; 2012 Jun; 28(12):i16-24. PubMed ID: 22689756
[TBL] [Abstract][Full Text] [Related]
7. Automatic annotation of spatial expression patterns via sparse Bayesian factor models.
Pruteanu-Malinici I; Mace DL; Ohler U
PLoS Comput Biol; 2011 Jul; 7(7):e1002098. PubMed ID: 21814502
[TBL] [Abstract][Full Text] [Related]
8. Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression.
Yuan L; Pan C; Ji S; McCutchan M; Zhou ZH; Newfeld SJ; Kumar S; Ye J
Bioinformatics; 2014 Jan; 30(2):266-73. PubMed ID: 24300439
[TBL] [Abstract][Full Text] [Related]
9. Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.
Marbach D; Roy S; Ay F; Meyer PE; Candeias R; Kahveci T; Bristow CA; Kellis M
Genome Res; 2012 Jul; 22(7):1334-49. PubMed ID: 22456606
[TBL] [Abstract][Full Text] [Related]
10. Automated annotation of Drosophila gene expression patterns using a controlled vocabulary.
Ji S; Sun L; Jin R; Kumar S; Ye J
Bioinformatics; 2008 Sep; 24(17):1881-8. PubMed ID: 18632750
[TBL] [Abstract][Full Text] [Related]
11. Deep convolutional neural networks for annotating gene expression patterns in the mouse brain.
Zeng T; Li R; Mukkamala R; Ye J; Ji S
BMC Bioinformatics; 2015 May; 16():147. PubMed ID: 25948335
[TBL] [Abstract][Full Text] [Related]
12. FlyIT: Drosophila Embryogenesis Image Annotation based on Image Tiling and Convolutional Neural Networks.
Long W; Li T; Yang Y; Shen HB
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(1):194-204. PubMed ID: 31425122
[TBL] [Abstract][Full Text] [Related]
13. AnnoFly: annotating Drosophila embryonic images based on an attention-enhanced RNN model.
Yang Y; Zhou M; Fang Q; Shen HB
Bioinformatics; 2019 Aug; 35(16):2834-2842. PubMed ID: 30601935
[TBL] [Abstract][Full Text] [Related]
14. Automatic image analysis for gene expression patterns of fly embryos.
Peng H; Long F; Zhou J; Leung G; Eisen MB; Myers EW
BMC Cell Biol; 2007 Jul; 8 Suppl 1(Suppl 1):S7. PubMed ID: 17634097
[TBL] [Abstract][Full Text] [Related]
15. Functional genome annotation of Drosophila seminal fluid proteins using transcriptional genetic networks.
Ayroles JF; Laflamme BA; Stone EA; Wolfner MF; Mackay TF
Genet Res (Camb); 2011 Dec; 93(6):387-95. PubMed ID: 22189604
[TBL] [Abstract][Full Text] [Related]
16. FlyBase: updates to the Drosophila melanogaster knowledge base.
Larkin A; Marygold SJ; Antonazzo G; Attrill H; Dos Santos G; Garapati PV; Goodman JL; Gramates LS; Millburn G; Strelets VB; Tabone CJ; Thurmond J;
Nucleic Acids Res; 2021 Jan; 49(D1):D899-D907. PubMed ID: 33219682
[TBL] [Abstract][Full Text] [Related]
17. Classification of Drosophila embryonic developmental stage range based on gene expression pattern images.
Ye J; Chen J; Li Q; Kumar S
Comput Syst Bioinformatics Conf; 2006; ():293-8. PubMed ID: 17369647
[TBL] [Abstract][Full Text] [Related]
18. myFX: a turn-key software for laboratory desktops to analyze spatial patterns of gene expression in Drosophila embryos.
Montiel I; Konikoff C; Braun B; Packard M; Gramates SL; Sun Q; Ye J; Kumar S
Bioinformatics; 2014 May; 30(9):1319-21. PubMed ID: 24413523
[TBL] [Abstract][Full Text] [Related]
19. Comparative validation of the D. melanogaster modENCODE transcriptome annotation.
Chen ZX; Sturgill D; Qu J; Jiang H; Park S; Boley N; Suzuki AM; Fletcher AR; Plachetzki DC; FitzGerald PC; Artieri CG; Atallah J; Barmina O; Brown JB; Blankenburg KP; Clough E; Dasgupta A; Gubbala S; Han Y; Jayaseelan JC; Kalra D; Kim YA; Kovar CL; Lee SL; Li M; Malley JD; Malone JH; Mathew T; Mattiuzzo NR; Munidasa M; Muzny DM; Ongeri F; Perales L; Przytycka TM; Pu LL; Robinson G; Thornton RL; Saada N; Scherer SE; Smith HE; Vinson C; Warner CB; Worley KC; Wu YQ; Zou X; Cherbas P; Kellis M; Eisen MB; Piano F; Kionte K; Fitch DH; Sternberg PW; Cutter AD; Duff MO; Hoskins RA; Graveley BR; Gibbs RA; Bickel PJ; Kopp A; Carninci P; Celniker SE; Oliver B; Richards S
Genome Res; 2014 Jul; 24(7):1209-23. PubMed ID: 24985915
[TBL] [Abstract][Full Text] [Related]
20. BEST: a novel computational approach for comparing gene expression patterns from early stages of Drosophila melanogaster development.
Kumar S; Jayaraman K; Panchanathan S; Gurunathan R; Marti-Subirana A; Newfeld SJ
Genetics; 2002 Dec; 162(4):2037-47. PubMed ID: 12524369
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
