254 related articles for article (PubMed ID: 24307551)
1. Amplification and thrifty single-molecule sequencing of recurrent somatic structural variations.
Patel A; Schwab R; Liu YT; Bafna V
Genome Res; 2014 Feb; 24(2):318-28. PubMed ID: 24307551
[TBL] [Abstract][Full Text] [Related]
2. LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data.
Fang L; Kao C; Gonzalez MV; Mafra FA; Pellegrino da Silva R; Li M; Wenzel SS; Wimmer K; Hakonarson H; Wang K
Nat Commun; 2019 Dec; 10(1):5585. PubMed ID: 31811119
[TBL] [Abstract][Full Text] [Related]
3. A pipeline for complete characterization of complex germline rearrangements from long DNA reads.
Mitsuhashi S; Ohori S; Katoh K; Frith MC; Matsumoto N
Genome Med; 2020 Jul; 12(1):67. PubMed ID: 32731881
[TBL] [Abstract][Full Text] [Related]
4. Precise detection of chromosomal translocation or inversion breakpoints by whole-genome sequencing.
Suzuki T; Tsurusaki Y; Nakashima M; Miyake N; Saitsu H; Takeda S; Matsumoto N
J Hum Genet; 2014 Dec; 59(12):649-54. PubMed ID: 25296578
[TBL] [Abstract][Full Text] [Related]
5. Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms.
Malhotra A; Lindberg M; Faust GG; Leibowitz ML; Clark RA; Layer RM; Quinlan AR; Hall IM
Genome Res; 2013 May; 23(5):762-76. PubMed ID: 23410887
[TBL] [Abstract][Full Text] [Related]
6. Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes.
Zhuang J; Weng Z
Nucleic Acids Res; 2015 Sep; 43(17):8146-56. PubMed ID: 26283183
[TBL] [Abstract][Full Text] [Related]
7. Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement.
Audano PA; Beck CR
Genome Res; 2024 Feb; 34(1):7-19. PubMed ID: 38176712
[TBL] [Abstract][Full Text] [Related]
8. Optimizing PCR assays for DNA-based cancer diagnostics.
Bashir A; Lu Q; Carson D; Raphael BJ; Liu YT; Bafna V
J Comput Biol; 2010 Mar; 17(3):369-81. PubMed ID: 20377451
[TBL] [Abstract][Full Text] [Related]
9. Resolving Breakpoints of Chromosomal Rearrangements at the Nucleotide Level Using Sanger Sequencing.
Nalbandian K; Piña-Aguilar RE; Morton CC
Curr Protoc Hum Genet; 2020 Dec; 108(1):e107. PubMed ID: 33369263
[TBL] [Abstract][Full Text] [Related]
10. Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions.
Sethi R; Becker J; Graaf J; Löwer M; Suchan M; Sahin U; Weber D
PLoS Comput Biol; 2020 Nov; 16(11):e1008397. PubMed ID: 33226985
[TBL] [Abstract][Full Text] [Related]
11. Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms.
Bartenhagen C; Dugas M
Brief Bioinform; 2016 Jan; 17(1):51-62. PubMed ID: 25998133
[TBL] [Abstract][Full Text] [Related]
12. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
Fujimoto A; Wong JH; Yoshii Y; Akiyama S; Tanaka A; Yagi H; Shigemizu D; Nakagawa H; Mizokami M; Shimada M
Genome Med; 2021 Apr; 13(1):65. PubMed ID: 33910608
[TBL] [Abstract][Full Text] [Related]
13. Human Structural Variation: Mechanisms of Chromosome Rearrangements.
Weckselblatt B; Rudd MK
Trends Genet; 2015 Oct; 31(10):587-599. PubMed ID: 26209074
[TBL] [Abstract][Full Text] [Related]
14. Detection of recurrent rearrangement breakpoints from copy number data.
Ritz A; Paris PL; Ittmann MM; Collins C; Raphael BJ
BMC Bioinformatics; 2011 Apr; 12():114. PubMed ID: 21510904
[TBL] [Abstract][Full Text] [Related]
15. Next-generation sequencing as a tool for breakpoint analysis in rearrangements of the globin gene clusters.
Clark BE; Shooter C; Smith F; Brawand D; Thein SL
Int J Lab Hematol; 2017 May; 39 Suppl 1():111-120. PubMed ID: 28447426
[TBL] [Abstract][Full Text] [Related]
16. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints.
Zhang Y; Chen F; Creighton CJ
BMC Bioinformatics; 2021 Mar; 22(1):135. PubMed ID: 33743584
[TBL] [Abstract][Full Text] [Related]
17. Deciphering the exact breakpoints of structural variations using long sequencing reads with DeBreak.
Chen Y; Wang AY; Barkley CA; Zhang Y; Zhao X; Gao M; Edmonds MD; Chong Z
Nat Commun; 2023 Jan; 14(1):283. PubMed ID: 36650186
[TBL] [Abstract][Full Text] [Related]
18. Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes.
Hillmer AM; Yao F; Inaki K; Lee WH; Ariyaratne PN; Teo AS; Woo XY; Zhang Z; Zhao H; Ukil L; Chen JP; Zhu F; So JB; Salto-Tellez M; Poh WT; Zawack KF; Nagarajan N; Gao S; Li G; Kumar V; Lim HP; Sia YY; Chan CS; Leong ST; Neo SC; Choi PS; Thoreau H; Tan PB; Shahab A; Ruan X; Bergh J; Hall P; Cacheux-Rataboul V; Wei CL; Yeoh KG; Sung WK; Bourque G; Liu ET; Ruan Y
Genome Res; 2011 May; 21(5):665-75. PubMed ID: 21467267
[TBL] [Abstract][Full Text] [Related]
19. Detection and visualization of complex structural variants from long reads.
Stephens Z; Wang C; Iyer RK; Kocher JP
BMC Bioinformatics; 2018 Dec; 19(Suppl 20):508. PubMed ID: 30577744
[TBL] [Abstract][Full Text] [Related]
20. PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations.
Wang M; Beck CR; English AC; Meng Q; Buhay C; Han Y; Doddapaneni HV; Yu F; Boerwinkle E; Lupski JR; Muzny DM; Gibbs RA
BMC Genomics; 2015 Mar; 16(1):214. PubMed ID: 25887218
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
