153 related articles for article (PubMed ID: 24311580)
1. LigSearch: a knowledge-based web server to identify likely ligands for a protein target.
de Beer TA; Laskowski RA; Duban ME; Chan AW; Anderson WF; Thornton JM
Acta Crystallogr D Biol Crystallogr; 2013 Dec; 69(Pt 12):2395-402. PubMed ID: 24311580
[TBL] [Abstract][Full Text] [Related]
2. ProFunc: a server for predicting protein function from 3D structure.
Laskowski RA; Watson JD; Thornton JM
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W89-93. PubMed ID: 15980588
[TBL] [Abstract][Full Text] [Related]
3. ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites.
Konc J; Miller BT; Štular T; Lešnik S; Woodcock HL; Brooks BR; Janežič D
J Chem Inf Model; 2015 Nov; 55(11):2308-14. PubMed ID: 26509288
[TBL] [Abstract][Full Text] [Related]
4. The FunFOLD2 server for the prediction of protein-ligand interactions.
Roche DB; Buenavista MT; McGuffin LJ
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W303-7. PubMed ID: 23761453
[TBL] [Abstract][Full Text] [Related]
5. MSDsite: a database search and retrieval system for the analysis and viewing of bound ligands and active sites.
Golovin A; Dimitropoulos D; Oldfield T; Rachedi A; Henrick K
Proteins; 2005 Jan; 58(1):190-9. PubMed ID: 15468317
[TBL] [Abstract][Full Text] [Related]
6. A web server for analysis, comparison and prediction of protein ligand binding sites.
Singh H; Srivastava HK; Raghava GP
Biol Direct; 2016 Mar; 11(1):14. PubMed ID: 27016210
[TBL] [Abstract][Full Text] [Related]
7. The ProFunc Function Prediction Server.
Laskowski RA
Methods Mol Biol; 2017; 1611():75-95. PubMed ID: 28451973
[TBL] [Abstract][Full Text] [Related]
8. ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites.
Konc J; Janežič D
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W215-20. PubMed ID: 24861616
[TBL] [Abstract][Full Text] [Related]
9. PESDserv: a server for high-throughput comparison of protein binding site surfaces.
Das S; Krein MP; Breneman CM
Bioinformatics; 2010 Aug; 26(15):1913-4. PubMed ID: 20538727
[TBL] [Abstract][Full Text] [Related]
10. Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning.
Ab Ghani NS; Ramlan EI; Firdaus-Raih M
Nucleic Acids Res; 2019 Jul; 47(W1):W350-W356. PubMed ID: 31106379
[TBL] [Abstract][Full Text] [Related]
11. WSsas: a web service for the annotation of functional residues through structural homologues.
Talavera D; Laskowski RA; Thornton JM
Bioinformatics; 2009 May; 25(9):1192-4. PubMed ID: 19251774
[TBL] [Abstract][Full Text] [Related]
12. PROCOGNATE: a cognate ligand domain mapping for enzymes.
Bashton M; Nobeli I; Thornton JM
Nucleic Acids Res; 2008 Jan; 36(Database issue):D618-22. PubMed ID: 17720712
[TBL] [Abstract][Full Text] [Related]
13. ANCHOR: web server for predicting protein binding regions in disordered proteins.
Dosztányi Z; Mészáros B; Simon I
Bioinformatics; 2009 Oct; 25(20):2745-6. PubMed ID: 19717576
[TBL] [Abstract][Full Text] [Related]
14. PDBsum1: A standalone program for generating PDBsum analyses.
Laskowski RA
Protein Sci; 2022 Dec; 31(12):e4473. PubMed ID: 36251626
[TBL] [Abstract][Full Text] [Related]
15. A tool to assist the study of specific features at protein binding sites.
Santander V; Portales MA; Melo F
Bioinformatics; 2003; 19 Suppl 1():i250-1. PubMed ID: 12855466
[TBL] [Abstract][Full Text] [Related]
16. FINDSITE
Zhou H; Cao H; Skolnick J
J Chem Inf Model; 2018 Nov; 58(11):2343-2354. PubMed ID: 30278128
[TBL] [Abstract][Full Text] [Related]
17. The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction.
Roche DB; Buenavista MT; Tetchner SJ; McGuffin LJ
Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W171-6. PubMed ID: 21459847
[TBL] [Abstract][Full Text] [Related]
18. PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database.
Wang X; Shen Y; Wang S; Li S; Zhang W; Liu X; Lai L; Pei J; Li H
Nucleic Acids Res; 2017 Jul; 45(W1):W356-W360. PubMed ID: 28472422
[TBL] [Abstract][Full Text] [Related]
19. MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms.
Holliday GL; Almonacid DE; Bartlett GJ; O'Boyle NM; Torrance JW; Murray-Rust P; Mitchell JB; Thornton JM
Nucleic Acids Res; 2007 Jan; 35(Database issue):D515-20. PubMed ID: 17082206
[TBL] [Abstract][Full Text] [Related]
20. pocketZebra: a web-server for automated selection and classification of subfamily-specific binding sites by bioinformatic analysis of diverse protein families.
Suplatov D; Kirilin E; Arbatsky M; Takhaveev V; Svedas V
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W344-9. PubMed ID: 24852248
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]