These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
184 related articles for article (PubMed ID: 24318825)
1. Segmentation and quantitative analysis of individual cells in developmental tissues. Nandy K; Kim J; McCullough DP; McAuliffe M; Meaburn KJ; Yamaguchi TP; Gudla PR; Lockett SJ Methods Mol Biol; 2014; 1092():235-53. PubMed ID: 24318825 [TBL] [Abstract][Full Text] [Related]
2. NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei. Poulet A; Arganda-Carreras I; Legland D; Probst AV; Andrey P; Tatout C Bioinformatics; 2015 Apr; 31(7):1144-6. PubMed ID: 25416749 [TBL] [Abstract][Full Text] [Related]
3. Deciphering tissue morphodynamics using bioimage informatics. Dufour AC; Jonker AH; Olivo-Marin JC Philos Trans R Soc Lond B Biol Sci; 2017 May; 372(1720):. PubMed ID: 28348249 [TBL] [Abstract][Full Text] [Related]
4. An efficient interactive multi-label segmentation tool for 2D and 3D medical images using fully connected conditional random field. Li R; Chen X Comput Methods Programs Biomed; 2022 Jan; 213():106534. PubMed ID: 34839271 [TBL] [Abstract][Full Text] [Related]
5. The segmentation and visualization of a neuron in the housefly's visual system. Anderson JR; Barrett SF; Wilcox MJ Biomed Sci Instrum; 2005; 41():235-40. PubMed ID: 15850111 [TBL] [Abstract][Full Text] [Related]
6. An analytical tool that quantifies cellular morphology changes from three-dimensional fluorescence images. Haass-Koffler CL; Naeemuddin M; Bartlett SE J Vis Exp; 2012 Aug; (66):e4233. PubMed ID: 22951512 [TBL] [Abstract][Full Text] [Related]
7. Seg2Link: an efficient and versatile solution for semi-automatic cell segmentation in 3D image stacks. Wen C; Matsumoto M; Sawada M; Sawamoto K; Kimura KD Sci Rep; 2023 May; 13(1):7109. PubMed ID: 37217545 [TBL] [Abstract][Full Text] [Related]
8. NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects. Dubos T; Poulet A; Thomson G; Péry E; Chausse F; Tatout C; Desset S; van Wolfswinkel JC; Jacob Y BMC Bioinformatics; 2022 Jun; 23(1):216. PubMed ID: 35668354 [TBL] [Abstract][Full Text] [Related]
9. FocAn: automated 3D analysis of DNA repair foci in image stacks acquired by confocal fluorescence microscopy. Memmel S; Sisario D; Zimmermann H; Sauer M; Sukhorukov VL; Djuzenova CS; Flentje M BMC Bioinformatics; 2020 Jan; 21(1):27. PubMed ID: 31992200 [TBL] [Abstract][Full Text] [Related]
10. A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context. Vijayan A; Mody TA; Yu Q; Wolny A; Cerrone L; Strauss S; Tsiantis M; Smith RS; Hamprecht FA; Kreshuk A; Schneitz K Development; 2024 Jul; 151(14):. PubMed ID: 39036998 [TBL] [Abstract][Full Text] [Related]
11. TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization. Ollion J; Cochennec J; Loll F; Escudé C; Boudier T Bioinformatics; 2013 Jul; 29(14):1840-1. PubMed ID: 23681123 [TBL] [Abstract][Full Text] [Related]
12. NeuroMorph: a toolset for the morphometric analysis and visualization of 3D models derived from electron microscopy image stacks. Jorstad A; Nigro B; Cali C; Wawrzyniak M; Fua P; Knott G Neuroinformatics; 2015 Jan; 13(1):83-92. PubMed ID: 25240318 [TBL] [Abstract][Full Text] [Related]
13. Ranked retrieval of segmented nuclei for objective assessment of cancer gene repositioning. Cukierski WJ; Nandy K; Gudla P; Meaburn KJ; Misteli T; Foran DJ; Lockett SJ BMC Bioinformatics; 2012 Sep; 13():232. PubMed ID: 22971117 [TBL] [Abstract][Full Text] [Related]
14. Svetlana a supervised segmentation classifier for Napari. Cazorla C; Morin R; Weiss P Sci Rep; 2024 May; 14(1):11604. PubMed ID: 38773203 [TBL] [Abstract][Full Text] [Related]
15. Robust and automated three-dimensional segmentation of densely packed cell nuclei in different biological specimens with Lines-of-Sight decomposition. Mathew B; Schmitz A; Muñoz-Descalzo S; Ansari N; Pampaloni F; Stelzer EH; Fischer SC BMC Bioinformatics; 2015 Jun; 16():187. PubMed ID: 26049713 [TBL] [Abstract][Full Text] [Related]
16. Automatic wavelet-based 3D nuclei segmentation and analysis for multicellular embryo quantification. Wu TC; Wang X; Li L; Bu Y; Umulis DM Sci Rep; 2021 May; 11(1):9847. PubMed ID: 33972575 [TBL] [Abstract][Full Text] [Related]
17. Gebiss: an ImageJ plugin for the specification of ground truth and the performance evaluation of 3D segmentation algorithms. Kriston-Vizi J; Thong NW; Poh CL; Yee KC; Ling JS; Kraut R; Wasser M BMC Bioinformatics; 2011 Jun; 12():232. PubMed ID: 21668958 [TBL] [Abstract][Full Text] [Related]
18. VAST (Volume Annotation and Segmentation Tool): Efficient Manual and Semi-Automatic Labeling of Large 3D Image Stacks. Berger DR; Seung HS; Lichtman JW Front Neural Circuits; 2018; 12():88. PubMed ID: 30386216 [TBL] [Abstract][Full Text] [Related]
19. Rapid and Semi-automated Extraction of Neuronal Cell Bodies and Nuclei from Electron Microscopy Image Stacks. Holcomb PS; Morehead M; Doretto G; Chen P; Berg S; Plaza S; Spirou G Methods Mol Biol; 2016; 1427():277-90. PubMed ID: 27259933 [TBL] [Abstract][Full Text] [Related]
20. Confocal DNA cytometry: a contour-based segmentation algorithm for automated three-dimensional image segmentation. Beliën JA; van Ginkel HA; Tekola P; Ploeger LS; Poulin NM; Baak JP; van Diest PJ Cytometry; 2002 Sep; 49(1):12-21. PubMed ID: 12210606 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]