191 related articles for article (PubMed ID: 24328032)
1. DeGNServer: deciphering genome-scale gene networks through high performance reverse engineering analysis.
Li J; Wei H; Zhao PX
Biomed Res Int; 2013; 2013():856325. PubMed ID: 24328032
[TBL] [Abstract][Full Text] [Related]
2. Reverse engineering and analysis of genome-wide gene regulatory networks from gene expression profiles using high-performance computing.
Belcastro V; Gregoretti F; Siciliano V; Santoro M; D'Angelo G; Oliva G; di Bernardo D
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(3):668-78. PubMed ID: 21464509
[TBL] [Abstract][Full Text] [Related]
3. How to infer gene networks from expression profiles.
Bansal M; Belcastro V; Ambesi-Impiombato A; di Bernardo D
Mol Syst Biol; 2007; 3():78. PubMed ID: 17299415
[TBL] [Abstract][Full Text] [Related]
4. STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data.
Jupiter D; Chen H; VanBuren V
BMC Bioinformatics; 2009 Oct; 10():332. PubMed ID: 19828039
[TBL] [Abstract][Full Text] [Related]
5. cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets.
Xu H; Yu H; Tu K; Shi Q; Wei C; Li YY; Li YX
BMC Syst Biol; 2013; 7 Suppl 2(Suppl 2):S7. PubMed ID: 24565134
[TBL] [Abstract][Full Text] [Related]
6. DREAM3: network inference using dynamic context likelihood of relatedness and the inferelator.
Madar A; Greenfield A; Vanden-Eijnden E; Bonneau R
PLoS One; 2010 Mar; 5(3):e9803. PubMed ID: 20339551
[TBL] [Abstract][Full Text] [Related]
7. LegumeGRN: a gene regulatory network prediction server for functional and comparative studies.
Wang M; Verdier J; Benedito VA; Tang Y; Murray JD; Ge Y; Becker JD; Carvalho H; Rogers C; Udvardi M; He J
PLoS One; 2013; 8(7):e67434. PubMed ID: 23844010
[TBL] [Abstract][Full Text] [Related]
8. Inference of regulatory gene interactions from expression data using three-way mutual information.
Watkinson J; Liang KC; Wang X; Zheng T; Anastassiou D
Ann N Y Acad Sci; 2009 Mar; 1158():302-13. PubMed ID: 19348651
[TBL] [Abstract][Full Text] [Related]
9. Reverse engineering and analysis of large genome-scale gene networks.
Aluru M; Zola J; Nettleton D; Aluru S
Nucleic Acids Res; 2013 Jan; 41(1):e24. PubMed ID: 23042249
[TBL] [Abstract][Full Text] [Related]
10. A parallel implementation of the network identification by multiple regression (NIR) algorithm to reverse-engineer regulatory gene networks.
Gregoretti F; Belcastro V; di Bernardo D; Oliva G
PLoS One; 2010 Apr; 5(4):e10179. PubMed ID: 20422008
[TBL] [Abstract][Full Text] [Related]
11. Construction, visualisation, and clustering of transcription networks from microarray expression data.
Freeman TC; Goldovsky L; Brosch M; van Dongen S; Mazière P; Grocock RJ; Freilich S; Thornton J; Enright AJ
PLoS Comput Biol; 2007 Oct; 3(10):2032-42. PubMed ID: 17967053
[TBL] [Abstract][Full Text] [Related]
12. Fast calculation of pairwise mutual information for gene regulatory network reconstruction.
Qiu P; Gentles AJ; Plevritis SK
Comput Methods Programs Biomed; 2009 May; 94(2):177-80. PubMed ID: 19167129
[TBL] [Abstract][Full Text] [Related]
13. Designing a parallel evolutionary algorithm for inferring gene networks on the cloud computing environment.
Lee WP; Hsiao YT; Hwang WC
BMC Syst Biol; 2014 Jan; 8():5. PubMed ID: 24428926
[TBL] [Abstract][Full Text] [Related]
14. GeNeCK: a web server for gene network construction and visualization.
Zhang M; Li Q; Yu D; Yao B; Guo W; Xie Y; Xiao G
BMC Bioinformatics; 2019 Jan; 20(1):12. PubMed ID: 30616521
[TBL] [Abstract][Full Text] [Related]
15. Lists2Networks: integrated analysis of gene/protein lists.
Lachmann A; Ma'ayan A
BMC Bioinformatics; 2010 Feb; 11():87. PubMed ID: 20152038
[TBL] [Abstract][Full Text] [Related]
16. MARS: microarray analysis, retrieval, and storage system.
Maurer M; Molidor R; Sturn A; Hartler J; Hackl H; Stocker G; Prokesch A; Scheideler M; Trajanoski Z
BMC Bioinformatics; 2005 Apr; 6():101. PubMed ID: 15836795
[TBL] [Abstract][Full Text] [Related]
17. Cross-platform microarray data normalisation for regulatory network inference.
Sîrbu A; Ruskin HJ; Crane M
PLoS One; 2010 Nov; 5(11):e13822. PubMed ID: 21103045
[TBL] [Abstract][Full Text] [Related]
18. Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress.
Taylor RC; Acquaah-Mensah G; Singhal M; Malhotra D; Biswal S
PLoS Comput Biol; 2008 Aug; 4(8):e1000166. PubMed ID: 18769717
[TBL] [Abstract][Full Text] [Related]
19. MICRAT: a novel algorithm for inferring gene regulatory networks using time series gene expression data.
Yang B; Xu Y; Maxwell A; Koh W; Gong P; Zhang C
BMC Syst Biol; 2018 Dec; 12(Suppl 7):115. PubMed ID: 30547796
[TBL] [Abstract][Full Text] [Related]
20. BiC: a web server for calculating bimodality of coexpression between gene and protein networks.
Linderman GC; Patel VN; Chance MR; Bebek G
Bioinformatics; 2011 Apr; 27(8):1174-5. PubMed ID: 21345871
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]