BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

328 related articles for article (PubMed ID: 24334388)

  • 1. Algorithms for genome-scale phylogenetics using gene tree parsimony.
    Bansal MS; Eulenstein O
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(4):939-56. PubMed ID: 24334388
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models.
    Bansal MS; Burleigh JG; Eulenstein O
    BMC Bioinformatics; 2010 Jan; 11 Suppl 1(Suppl 1):S42. PubMed ID: 20122216
    [TBL] [Abstract][Full Text] [Related]  

  • 3. iGTP: a software package for large-scale gene tree parsimony analysis.
    Chaudhary R; Bansal MS; Wehe A; Fernández-Baca D; Eulenstein O
    BMC Bioinformatics; 2010 Nov; 11():574. PubMed ID: 21092314
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.
    Chaudhary R; Burleigh JG; Eulenstein O
    BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S11. PubMed ID: 22759416
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony.
    Wehe A; Bansal MS; Burleigh JG; Eulenstein O
    Bioinformatics; 2008 Jul; 24(13):1540-1. PubMed ID: 18474508
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Species Tree Inference Using a Mixture Model.
    Ullah I; Parviainen P; Lagergren J
    Mol Biol Evol; 2015 Sep; 32(9):2469-82. PubMed ID: 25963975
    [TBL] [Abstract][Full Text] [Related]  

  • 7. From gene trees to species trees II: species tree inference by minimizing deep coalescence events.
    Zhang L
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(6):1685-91. PubMed ID: 21576759
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem.
    Górecki P; Eulenstein O
    BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S14. PubMed ID: 22759419
    [TBL] [Abstract][Full Text] [Related]  

  • 9. On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
    Kundu S; Bansal MS
    BMC Bioinformatics; 2018 Aug; 19(Suppl 9):290. PubMed ID: 30367593
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Locating large-scale gene duplication events through reconciled trees: implications for identifying ancient polyploidy events in plants.
    Burleigh JG; Bansal MS; Wehe A; Eulenstein O
    J Comput Biol; 2009 Aug; 16(8):1071-83. PubMed ID: 19689214
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Consensus properties for the deep coalescence problem and their application for scalable tree search.
    Lin HT; Burleigh JG; Eulenstein O
    BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S12. PubMed ID: 22759417
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multiple Optimal Reconciliations Under the Duplication-Loss-Coalescence Model.
    Du H; Ong YS; Knittel M; Mawhorter R; Liu N; Gross G; Tojo R; Libeskind-Hadas R; Wu YC
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2144-2156. PubMed ID: 31199267
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.
    Górecki P; Burleigh GJ; Eulenstein O
    BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S15. PubMed ID: 21342544
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Inferring Pareto-optimal reconciliations across multiple event costs under the duplication-loss-coalescence model.
    Mawhorter R; Liu N; Libeskind-Hadas R; Wu YC
    BMC Bioinformatics; 2019 Dec; 20(Suppl 20):639. PubMed ID: 31842732
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
    Kordi M; Bansal MS
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1077-1090. PubMed ID: 28622673
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Species Tree Estimation from Genome-Wide Data with guenomu.
    de Oliveira Martins L; Posada D
    Methods Mol Biol; 2017; 1525():461-478. PubMed ID: 27896732
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Effect of Incomplete Lineage Sorting On Tree-Reconciliation-Based Inference of Gene Duplication.
    Zheng Y; Zhang L
    IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(3):477-85. PubMed ID: 26356016
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Reconciliation with non-binary species trees.
    Vernot B; Stolzer M; Goldman A; Durand D
    J Comput Biol; 2008 Oct; 15(8):981-1006. PubMed ID: 18808330
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Exact median-tree inference for unrooted reconciliation costs.
    Górecki P; Markin A; Eulenstein O
    BMC Evol Biol; 2020 Oct; 20(Suppl 1):136. PubMed ID: 33115401
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.
    Stolzer M; Lai H; Xu M; Sathaye D; Vernot B; Durand D
    Bioinformatics; 2012 Sep; 28(18):i409-i415. PubMed ID: 22962460
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.