BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

204 related articles for article (PubMed ID: 24340000)

  • 1. CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis.
    Kutmon M; Kelder T; Mandaviya P; Evelo CT; Coort SL
    PLoS One; 2013; 8(12):e82160. PubMed ID: 24340000
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CyTargetLinker app update: A flexible solution for network extension in Cytoscape.
    Kutmon M; Ehrhart F; Willighagen EL; Evelo CT; Coort SL
    F1000Res; 2018; 7():. PubMed ID: 31489175
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Development and use of a Cytoscape app for GRNCOP2.
    Díaz-Montaña JJ; Díaz-Díaz N; Barranco CD; Ponzoni I
    Comput Methods Programs Biomed; 2019 Aug; 177():211-218. PubMed ID: 31319950
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.
    Le Béchec A; Portales-Casamar E; Vetter G; Moes M; Zindy PJ; Saumet A; Arenillas D; Theillet C; Wasserman WW; Lecellier CH; Friederich E
    BMC Bioinformatics; 2011 Mar; 12():67. PubMed ID: 21375730
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ReNE: a cytoscape plugin for regulatory network enhancement.
    Politano G; Benso A; Savino A; Di Carlo S
    PLoS One; 2014; 9(12):e115585. PubMed ID: 25541727
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.
    Lepoivre C; Bergon A; Lopez F; Perumal NB; Nguyen C; Imbert J; Puthier D
    BMC Bioinformatics; 2012 Jan; 13():19. PubMed ID: 22292669
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.
    Doncheva NT; Morris JH; Gorodkin J; Jensen LJ
    J Proteome Res; 2019 Feb; 18(2):623-632. PubMed ID: 30450911
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Network Building with the Cytoscape BioGateway App Explained in Five Use Cases.
    Puig RR; Holmås S; Mironov V; Kuiper M
    Curr Protoc Bioinformatics; 2020 Dec; 72(1):e106. PubMed ID: 32986267
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Cytoscape: a software environment for integrated models of biomolecular interaction networks.
    Shannon P; Markiel A; Ozier O; Baliga NS; Wang JT; Ramage D; Amin N; Schwikowski B; Ideker T
    Genome Res; 2003 Nov; 13(11):2498-504. PubMed ID: 14597658
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A network biology workflow to study transcriptomics data of the diabetic liver.
    Kutmon M; Evelo CT; Coort SL
    BMC Genomics; 2014 Nov; 15(1):971. PubMed ID: 25399255
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The MicroRNA Interaction Network of Lipid Diseases.
    Kandhro AH; Shoombuatong W; Nantasenamat C; Prachayasittikul V; Nuchnoi P
    Front Genet; 2017; 8():116. PubMed ID: 29018475
    [No Abstract]   [Full Text] [Related]  

  • 12. RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse.
    Liu ZP; Wu C; Miao H; Wu H
    Database (Oxford); 2015; 2015():. PubMed ID: 26424082
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The Cyni framework for network inference in Cytoscape.
    Guitart-Pla O; Kustagi M; Rügheimer F; Califano A; Schwikowski B
    Bioinformatics; 2015 May; 31(9):1499-501. PubMed ID: 25527096
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identifier Mapping in Cytoscape.
    Treister A; Pico AR
    F1000Res; 2018; 7():725. PubMed ID: 30079244
    [TBL] [Abstract][Full Text] [Related]  

  • 15. miRNet - dissecting miRNA-target interactions and functional associations through network-based visual analysis.
    Fan Y; Siklenka K; Arora SK; Ribeiro P; Kimmins S; Xia J
    Nucleic Acids Res; 2016 Jul; 44(W1):W135-41. PubMed ID: 27105848
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.
    Mustafin ZS; Lashin SA; Matushkin YG; Gunbin KV; Afonnikov DA
    BMC Bioinformatics; 2017 Jan; 18(Suppl 1):1427. PubMed ID: 28466792
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
    Foffi G; Pastore A; Piazza F; Temussi PA
    Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks.
    Fazekas D; Koltai M; Türei D; Módos D; Pálfy M; Dúl Z; Zsákai L; Szalay-Bekő M; Lenti K; Farkas IJ; Vellai T; Csermely P; Korcsmáros T
    BMC Syst Biol; 2013 Jan; 7():7. PubMed ID: 23331499
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling.
    Hsu SD; Huang HY; Chou CH; Sun YM; Hsu MT; Tsou AP
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S12. PubMed ID: 25707768
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GNC-app: A new Cytoscape app to rate gene networks biological coherence using gene-gene indirect relationships.
    Díaz-Montaña JJ; Gómez-Vela F; Díaz-Díaz N
    Biosystems; 2018 Apr; 166():61-65. PubMed ID: 29408296
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.