These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

188 related articles for article (PubMed ID: 24343026)

  • 21. Covariance analysis of RNA recognition motifs identifies functionally linked amino acids.
    Crowder S; Holton J; Alber T
    J Mol Biol; 2001 Jul; 310(4):793-800. PubMed ID: 11453688
    [TBL] [Abstract][Full Text] [Related]  

  • 22. RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.
    Terribilini M; Sander JD; Lee JH; Zaback P; Jernigan RL; Honavar V; Dobbs D
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W578-84. PubMed ID: 17483510
    [TBL] [Abstract][Full Text] [Related]  

  • 23. DRNApred, fast sequence-based method that accurately predicts and discriminates DNA- and RNA-binding residues.
    Yan J; Kurgan L
    Nucleic Acids Res; 2017 Jun; 45(10):e84. PubMed ID: 28132027
    [TBL] [Abstract][Full Text] [Related]  

  • 24. RNA-binding residues in sequence space: conservation and interaction patterns.
    Spriggs RV; Jones S
    Comput Biol Chem; 2009 Oct; 33(5):397-403. PubMed ID: 19700370
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Analyses on clustering of the conserved residues at protein-RNA interfaces and its application in binding site identification.
    Yang Z; Deng X; Liu Y; Gong W; Li C
    BMC Bioinformatics; 2020 Feb; 21(1):57. PubMed ID: 32066366
    [TBL] [Abstract][Full Text] [Related]  

  • 26. RBRDetector: improved prediction of binding residues on RNA-binding protein structures using complementary feature- and template-based strategies.
    Yang XX; Deng ZL; Liu R
    Proteins; 2014 Oct; 82(10):2455-71. PubMed ID: 24854765
    [TBL] [Abstract][Full Text] [Related]  

  • 27. 3dRPC: a web server for 3D RNA-protein structure prediction.
    Huang Y; Li H; Xiao Y
    Bioinformatics; 2018 Apr; 34(7):1238-1240. PubMed ID: 29186336
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Common physical basis of macromolecule-binding sites in proteins.
    Chen YC; Lim C
    Nucleic Acids Res; 2008 Dec; 36(22):7078-87. PubMed ID: 18988628
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature.
    Ma X; Guo J; Wu J; Liu H; Yu J; Xie J; Sun X
    Proteins; 2011 Apr; 79(4):1230-9. PubMed ID: 21268114
    [TBL] [Abstract][Full Text] [Related]  

  • 30. DRBpred: A sequence-based machine learning method to effectively predict DNA- and RNA-binding residues.
    Kabir MWU; Alawad DM; Pokhrel P; Hoque MT
    Comput Biol Med; 2024 Mar; 170():108081. PubMed ID: 38295475
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Efficient mapping of RNA-binding residues in RNA-binding proteins using local sequence features of binding site residues in protein-RNA complexes.
    Agarwal A; Kant S; Bahadur RP
    Proteins; 2023 Sep; 91(9):1361-1379. PubMed ID: 37254800
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Structure, stability and specificity of the binding of ssDNA and ssRNA with proteins.
    Pal A; Levy Y
    PLoS Comput Biol; 2019 Apr; 15(4):e1006768. PubMed ID: 30933978
    [TBL] [Abstract][Full Text] [Related]  

  • 33. GraphBind: protein structural context embedded rules learned by hierarchical graph neural networks for recognizing nucleic-acid-binding residues.
    Xia Y; Xia CQ; Pan X; Shen HB
    Nucleic Acids Res; 2021 May; 49(9):e51. PubMed ID: 33577689
    [TBL] [Abstract][Full Text] [Related]  

  • 34. PRIDB: a Protein-RNA interface database.
    Lewis BA; Walia RR; Terribilini M; Ferguson J; Zheng C; Honavar V; Dobbs D
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D277-82. PubMed ID: 21071426
    [TBL] [Abstract][Full Text] [Related]  

  • 35. RNA recognition by transcriptional antiterminators of the BglG/SacY family: mapping of SacY RNA binding site.
    Declerck N; Minh NL; Yang Y; Bloch V; Kochoyan M; Aymerich S
    J Mol Biol; 2002 Jun; 319(5):1035-48. PubMed ID: 12079345
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A comprehensive comparative review of sequence-based predictors of DNA- and RNA-binding residues.
    Yan J; Friedrich S; Kurgan L
    Brief Bioinform; 2016 Jan; 17(1):88-105. PubMed ID: 25935161
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Prediction of protein-RNA binding sites by a random forest method with combined features.
    Liu ZP; Wu LY; Wang Y; Zhang XS; Chen L
    Bioinformatics; 2010 Jul; 26(13):1616-22. PubMed ID: 20483814
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Exploiting structural and topological information to improve prediction of RNA-protein binding sites.
    Maetschke SR; Yuan Z
    BMC Bioinformatics; 2009 Oct; 10():341. PubMed ID: 19835626
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Systematic domain-based aggregation of protein structures highlights DNA-, RNA- and other ligand-binding positions.
    Kobren SN; Singh M
    Nucleic Acids Res; 2019 Jan; 47(2):582-593. PubMed ID: 30535108
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Understanding the recognition mechanism of protein-RNA complexes using energy based approach.
    Gromiha MM; Yokota K; Fukui K
    Curr Protein Pept Sci; 2010 Nov; 11(7):629-38. PubMed ID: 20887255
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.